BAC Information

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BAC

Clone NameMSMg01-184I06
Chromosome10 (Build37)
Map Location 45,227,218 - 45,227,528
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b
Downstream geneDbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184I06.T7 (MSMg01no184_i06.b1)MSMg01-184I06.TJ (MSMg01no184_i06.g1)
ACCAG376778AG376779
length737697
length of high quality
(start - end)
317 (59 - 375)280 (58 - 337)
definitionCHROMAT_FILE: MSMg01no184_i06.b1 PHD_FILE: MSMg01no184_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:55 2005CHROMAT_FILE: MSMg01no184_i06.g1 PHD_FILE: MSMg01no184_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGGGGNNAATTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTGTATAAGCACATCTGTTACGTACCACTGGTC
TTGTCCTGTATAATTCAATTATTTCCTTTGATTTATTGATGAAGAAAATG
GTTCTTAAAGATTTCATTTATTTTCTTCTTTCAGAAAAGGTGATATGAGT
GAAAATTACCAAAATTCATTACACACATGTATGAAATAGTCCAAGAATTT
TCTAAAAAAACACGGGGCAGATTACCTGAGGACGTTTGTATTGTTTTAAG
AAGAGGTCCTGCTGTCCTCCAACTACTAATATTCTGCCTCAGCCTTTCAA
TTGCTGGAATTATAGAAGTATTGTTTTATGCCCACGCTAATGTTACCTTT
GTTTTGTTCAATAACATATTTGCAACCAACATTTCAAATCCCTCAAGGCC
TCTAGAGAATTATTTCCGTACTTGTTTAGTATGGTTCCTCCCCAAACAAA
ATGGAACTGTCTCATCTCCCCTCACTTTTGCTAGATACAACTATAAACCC
TGGAGACCACAAAGACAAAGTGGGAGAGGCAAACTGTCGAGGGTTAGGAA
AGAGGAAGGGAAGCACAATGGTCAGGCATCATAAGATCTGCCCACCTCTC
ATCTCTCCTGAACCTTTATCTACTAGAAAATGTCATACATTGGCTTATTT
CTCCCCAGACTAAATGCAGGTCTGGCAACACCATCAG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGTCCTCAACAGCAATGTAGAAGTATAAGCTGAATAAACCCT
TTCCTCCCCAACTTGCTTTTTGGTCATGTTGTTTTTGTACAGGAACACAA
ACCCTGACTAAGACAGCAACATATACTGGGATACCATAGTGACACAAATG
GAAGTAACCACTTTTTGATTAATTTTAAGGCCCAGTCTATGAAATGAAAC
TCATATATTACACAGCAAAAATGGCCAAGAACCTGAGATCAGATAGGTAT
AGACCTACTGTTATTAGTCTGTTAAAGGAATAGCAATAATTTCTTTTGAC
CTCCCCCCCCGTCAAACACAAAGAACAGAGAATTGTTCAACCCTCCCCCC
GTAAGATTTTTCTAGCACTAGATGGTGATTAACATAACAGGCAAATAAGC
AGAGAGACTCTGGAACACTCATCTCTAAATGTGCTGACGTATGCCTTTAT
TAAACGCCTCCCTTTCAAGTTCAACAAATTCTTTACAACCTAACGATTGT
TTTATCTGCAATAGGATTAAGATTCCCATAACACCTCTATTTCACATCTA
AATTTACCCGTACCATATTTGTTTCTTGGCTCCGCGCTTTTCTCCCCATA
TATCAACACTTACTTTTTATACCATATACTCTATTCTATTATCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_i06.b1 MSMg01no184_i06.b1 CHROMAT_FILE:
MSMg01no184_i06.b1 PHD_FILE: MSMg01no184_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:55 2005
         (317 letters)



>mm_chr10_45227014_45227730
          Length = 717

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtataagcacatctgttacgtaccactggtcttgtcctgtataattcaattat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctgtataagcacatctgttacgtaccactggtcttgtcctgtataattcaattat 456

                                                                       
Query: 65  ttcctttgatttattgatgaagaaaatggttcttaaagatttcatttattttcttctttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttcctttgatttattgatgaagaaaatggttcttaaagatttcatttattttcttctttc 396

                                                                       
Query: 125 agaaaaggtgatatgagtgaaaattaccaaaattcattacacacatgtatgaaatagtcc 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agaaaaggtgatatgaatgaaaattaccaaaattcattacacacatgtatgaaatagtcc 336

                                                                       
Query: 185 aagaattttctaaaaaaacacggggcagattacctgaggacgtttgtattgttttaagaa 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 335 aagaattttctaaaaaaacacggggcagattacctgaggacatttgtattgttttaagaa 276

                                                                       
Query: 245 gaggtcctgctgtcctccaactactaatattctgcctcagcctttcaattgctggaatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaggtcctgctgtcctccaactactaatattctgcctcagcctttcaattgctggaatta 216

                      
Query: 305 tagaagtattg 315
           |||||||||||
Sbjct: 215 tagaagtattg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)