BAC Information

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BAC

Clone NameMSMg01-185C18
Chromosome10 (Build37)
Map Location 119,451,249 - 119,451,552
singlet/doubletsinglet
Overlap geneGrip1
Upstream geneLOC100042861, LOC674417, Cand1
Downstream geneHelb, Irak3, Tmbim4, 1190005P17Rik, Hmga2, LOC100042902, Msrb3, LOC100043488, Lemd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185C18.T7 (MSMg01no185_c18.b1)MSMg01-185C18.TJ (MSMg01no185_c18.g1)
ACCAG377244AG377245
length691763
length of high quality
(start - end)
234 (124 - 357)305 (88 - 392)
definitionCHROMAT_FILE: MSMg01no185_c18.b1 PHD_FILE: MSMg01no185_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:48 2005CHROMAT_FILE: MSMg01no185_c18.g1 PHD_FILE: MSMg01no185_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATATGGGAAGGAGAAAGCCAACACAGACACACATACACACACAC
ACACACACACACACACTCACACACACACGTACTAAAATTATTTTAAATTA
CCAAAACAGATGACTAATTCTAGATCATTATAGTTCATAAATATTTTAGC
TTAGCCCTATTGGCACTTAAGCCAGATGAATCTTCAATGTATGGAGCTTT
CTATACATTATACAATATTAAACAGCATCTTTGGCCTCTACTCACAAGAT
GCAGGCTGTAACCACCCACCCAGCTGTGACAATCAAAAATACCCCAGGTA
TTGTCAGATGCTCCCAGAACANACCCCAACAAACATTTCCAGAGCATGGA
ACAAGAAAATCAAACCAGAAAAGACAAGAGCTGTTCCTAGAAAGCGCGAT
GGCAGTTGTGTTTAGGTCTGATGAGGTACTGGGAGCAGGAGGAGAGAAGG
GAACAGGAGAAAAACAACTGAGTTGTCTTAGGTTTCTCTCTGCAGGGTTC
TCTGCCTGTAGTACCTGCAGGGCGCATCAAAGGCGAGCAGCAGGCCCACT
CTATGAAAAGTCACAAGTTAACTGTGCAGAGGGGTACACGGCACTAGGTT
CAAAATCATAATGCGTATTCAAATGTCTAGGCTTGGTGTTN
GTTTTATTCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCACATCATAA
AGAGCAGCCTGGAAATTAACCGCCTGCATAAATTGCTACCTTTTGCTTTT
CTGATCGAGACTCTGGGAAGGTTCCTCAAATGAGATGAAGGGTGGAACAA
CATGGGGACAGGAAGGCCAGTGCTCAGGCTGACAGAATGTGTTGGGATCT
GTTTGGCCTTTTATTAGTTTTGGGTCTTTGGGTAGTTACACAGCCCAACC
ACAGCTTTTCCTTCTGTAAAATGGGTCATCGCTGGGCTGCCCAGGATTAA
GAAAGGACACACATGTTATCAGAAGGTGTTTTGTCTCACTTCGCCAGCGA
CAAATCCCTGTTGCAAAGGTCAACAGACAGGTCAGCGCCCAAAAGGATTT
AGGGACAAGGGCACACACAGGGCAGAGACAATGAAAGTTCTCTGACTTGA
CAGGCAAGTGTCTTTGTTGGAAGGCAGGAGCTATGATTCTGGACTTGTTG
GGATGGGAGGGCACCGGGGTGTGGCCTTTTCTGTTAGTTTACCTACTTCA
ACTGCTATAATAAATCATTCTATATTATCATAACACCTATAAAAGCAATG
TCTGGCTCTACTGTGCTGTAAATGTTTTATTGAGGACCCATGAACATTGC
CCCGAAACTGCTCACCACATTTAAATTCAGAGGTGGTCTTTTTTTTTTTT
TTTTAAACTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_c18.g1 MSMg01no185_c18.g1 CHROMAT_FILE:
MSMg01no185_c18.g1 PHD_FILE: MSMg01no185_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:48 2005
         (305 letters)



>mm_chr10_119451217_119451921
          Length = 705

 Score =  503 bits (260), Expect = e-147
 Identities = 293/304 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcacatcataaagagcagcctggaaattaaccgcctgcataaattgctaccttttgct 60
           |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 336 agtcacatcataaagagcggcctggaaattaaccgcctgcataaaatgctaccttttgct 277

                                                                       
Query: 61  tttctgatcgagactctgggaaggttcctcaaatgagatgaagggtggaacaacatgggg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tttctgattgagactctgggaaggttcctcaaatgagatgaagggtggaacaacatgggg 217

                                                                       
Query: 121 acaggaaggccagtgctcaggctgacagaatgtgttgggatctgtttggccttttattag 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 216 acaggaaggccagtgctcaggctgacagaatgtgttggggtctgtttggccttttattag 157

                                                                       
Query: 181 ttttgggtctttgggtagttacacagcccaaccacagcttttccttctgtaaaatgggtc 240
           |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct: 156 ttttgggtctttgggtagttacgctgcccaaccacagcttttccttctgaaaaatgggtc 97

                                                                       
Query: 241 atcgctgggctgcccaggattaagaaaggacacacatgttatcagaaggtgttttgtctc 300
           ||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||
Sbjct: 96  atcgctgggctgcccaggattaagaaaggacacacatgtcatcagaaggtgccgtgtctc 37

               
Query: 301 actt 304
           ||||
Sbjct: 36  actt 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)