BAC Information

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BAC

Clone NameMSMg01-185E05
Chromosome10 (Build37)
Map Location 30,140,589 - 30,255,746
singlet/doubletdoublet
Overlap geneTrmt11
Upstream geneRspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
Downstream geneHint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185E05.T7 (MSMg01no185_e05.b1)MSMg01-185E05.TJ (MSMg01no185_e05.g1)
ACCAG377308AG377309
length725727
length of high quality
(start - end)
235 (124 - 358)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no185_e05.b1 PHD_FILE: MSMg01no185_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:54 2005CHROMAT_FILE: MSMg01no185_e05.g1 PHD_FILE: MSMg01no185_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,255,519 - 30,255,746)(30,140,589 - 30,140,869)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGATATCCAGGGCTATACAGAGAACCCCTGTCTCAAAAAAAAAC
AAAAAAGCAAGAAAGTTAGATCTCATTCAGGGAAGTGCTATATGAATTTA
CAGTAAATTTCCAAAAGTCTGTGTGTAGTTGAATGTGAATTTAAAGAAAT
ACATAGGAAAAGGAACTTTATTTTAACTTAGGTTTCTGTTTCTGCTTGAA
ATTGATTGTGAGATTGAGTGTGAAACTAATGTTTCAGGTTTCTGTCAGTC
CTCTCATCTAACCCAGAATGTGTGGGGCATTCTAACCCAGATTAACTCTT
TCAATGTTCATTGTTTACCCCCGCACCTCCAGGCCTTATTTAGCTGTGAA
GTCTATAGGCGTGGAACTCCCCAGACAAAAAGCATCTGCATCTCTTGTGT
TGGAATCTCTTGTGCTGATGGAATGGGGACACAGTTTGAAGTTTTGTGTA
ACTTTGTGACATTACAAACTGCCACAGTTTCCTGGTGTATCCCTTCTCTC
TTGACGTGAAGCTTCTTTGGTATTATCCACAGCCCAGATGATTTCAGGGA
ACGGTGAGATAGTTGTAGTCTGACCATGTTCTTTCTCTTTGCCCAGTGAG
GTGAAGTGATGTCACTTGGAATTCCCAAGTGTGATGCAAATGTAGGGTGT
GTATTCATACTGTAAAGCCAAGCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGTAGTCTCTGCACCTTGGAGGAT
AAGACAGGTCACAAATAAAACGCCACTGTGGCATTAAGGAGATCTTATCT
CAAAAAAGAAAAGCAAAAGCATGCAGATTGCTTTAGATGTAATGGGTCCT
CTGTCTACACAAGACACAAGACCCTCTCTGTCAGCCAGACAGCAGGCTAA
GGTCCACACCCAATTATTTCTCTTGCTAAATTTAGTCCAGTCTGCTGTTC
ATTTCTCCTAAGAGCAGTAAGTGGTAGGATAAGTCAAGTTGATAGCTTGG
TTCTCCTATTTTTCAGCCCCCACCCCATTTAGTCTAGAAAAATAATTCGT
TGAGAAAATTTGACACCTTTTTTTTGATCATGATTTTTGAAAGCCAACAG
ATTTGATCAGATCTGAATTACACAAAGTAGGGAAGTCAGCCTCTGGGCCA
GCCAAACTACCTGCTTTCTGAAGGGGTGGTTTAAAAAAAATCAATTCTGT
GTGGACAAGATACAAGGTACAAAAGATGAATTATTATGAACAGAAATTTC
ACAGATTTAATAGTCTTTAGAAAAGAAAAATGATAAAAATTCCAAAAGTA
TTTTGAGACCATTTCAATAACAAATAATGATCACAATACTTTGTGGTACC
TTGTAGACCTTGAAAGAACAGTTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_e05.b1 MSMg01no185_e05.b1 CHROMAT_FILE:
MSMg01no185_e05.b1 PHD_FILE: MSMg01no185_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:54 2005
         (235 letters)



>mm_chr10_30255314_30255948
          Length = 635

 Score =  395 bits (204), Expect = e-114
 Identities = 222/228 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   agggaagtgctatatgaatttacagtaaatttccaaaagtctgtgtgtagttgaatgtga 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agggaagtgctatatgaatttacagtaaatttccaaaagtctgtgtgtagttgaatgtga 374

                                                                       
Query: 66  atttaaagaaatacataggaaaaggaactttattttaacttaggtttctgtttctgcttg 125
           |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct: 373 atttaaagaaatacataggaaatggaactttatttcaacttaggtttctgtttctacttg 314

                                                                       
Query: 126 aaattgattgtgagattgagtgtgaaactaatgtttcaggtttctgtcagtcctctcatc 185
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaattgtttgtgagactgagtgtgaaactaatgtttcaggtttctgtcagtcctctcatc 254

                                                           
Query: 186 taacccagaatgtgtggggcattctaacccagattaactctttcaatg 233
           |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 253 taacccagaatgtgtggggcattctaacccagatcaactctttcaatg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no185_e05.g1 MSMg01no185_e05.g1 CHROMAT_FILE:
MSMg01no185_e05.g1 PHD_FILE: MSMg01no185_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:55 2005
         (285 letters)



>mm_chr10_30140389_30141073
          Length = 685

 Score =  505 bits (261), Expect = e-147
 Identities = 276/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtagtctctgcaccttggaggataagacaggtcacaaataaaacgccactgtggcatt 60
           |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 201 ctgtagtctctgcaccttggaggataagacagatcacaaataaaaagccactgtggcatt 260

                                                                       
Query: 61  aaggagatcttatctcaaaaaagaaaagcaaaagcatgcagattgctttagatgtaatgg 120
           | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 agggagatcttatctcaaaaaagaaaaacaaaagcatgcagattgctttagatgtaatgg 320

                                                                       
Query: 121 gtcctctgtctacacaagacacaagaccctctctgtcagccagacagcaggctaaggtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctctgtctacacaagacacaagaccctctctgtcagccagacagcaggctaaggtcc 380

                                                                       
Query: 181 acacccaattatttctcttgctaaatttagtccagtctgctgttcatttctcctaagagc 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 acacccaattatttctcttgctaaatttagtccagtctgctgttcacttctcctaagagc 440

                                                    
Query: 241 agtaagtggtaggataagtcaagttgatagcttggttctcc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtaagtggtaggataagtcaagttgatagcttggttctcc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)