BAC Information

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BAC

Clone NameMSMg01-185M13
Chromosome10 (Build37)
Map Location 76,374,015 - 76,419,192
singlet/doubletdoublet
Overlap genePcbp3
Upstream geneSmarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1
Downstream geneLOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185M13.T7 (MSMg01no185_m13.b1)MSMg01-185M13.TJ (MSMg01no185_m13.g1)
ACCAG377666AG377667
length706705
length of high quality
(start - end)
632 (46 - 677)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no185_m13.b1 PHD_FILE: MSMg01no185_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:35 2005CHROMAT_FILE: MSMg01no185_m13.g1 PHD_FILE: MSMg01no185_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,374,015 - 76,374,643)(76,418,917 - 76,419,192)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTACCGCACTGGAACATGGAATATGAAATAAACTAAGTCTGTGTG
ACCAAGCAATGATCCTTCATATTTGATTCAGGAATAAACTTTCTCTTGTC
CCCTTTGAGGTCAGAGCTGTATCTTTTTACTTTAACAGTAGTCTCAATAT
AGGAGTCCAGAATCCATTTTTCACTAAAGGAGACACCAGGATGAGAGCCA
GGTACCAGCATGGGCCCGTTGGGCCCAACCATCCAGGGTTCCTACCTTGA
GTGGATATTGTGAGTGGACCTCTCTTGGCTTAAATGATGATCTATTTGTT
TATTCCATGATGATTTTTACATTCTACTTGTTAGGTACCTTTTTTTGGCT
GCTTTAAAAGCATTTGGTTTGAAGTATCAGTGTGGTCTGTTTGCTTTGAA
AGCATTTTGGGGTCTCACCGTTGACTGTTAATCCGCTAACATTCTGTCCT
TTTTCTCTAGCTCCTCATCCAATATCTGGGAAAGGATCTGTGAAGAAAAG
CTGGTACTCCTATTCCAGCTGATTTTATGTTTGGTAAGTGTATCTATTCA
ACTTACAAGTGTTTTGTTTCATTTTGTTTTTTGAAAGGTAGCTGAACATC
TGCTCTGCAGTGGTTTGCATGAGGACATCTTTGGTCCTCGGTTGGTACCA
CTGTTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTGTCTCCGGAGTCCTTGCA
GCTGGCTCAGCCTCTGCTTGCAGAGCGCCATGCTCCATTGGCTCACCTTT
GCTCTGTGCTGGGCCCCTGGAAGACAGTTGTCCTGGTGCACACCACTGAG
ACCATGGGCCGCAGCCCCTGTTGTTGGTGTCAATTACTTTCCAAAAGCTT
GATTCCCAGCCTCGGGCATTCTTTAATCTTTAGATAATAGTGCTGCCAAT
CAGGTAGGTCTGAAATATCTCACAGTTTTGATTTGCATTTCCCTGATTAC
TATTGTTTTTGACCCCTCTCCCCCCCCCATCTCCCATTTTTTTTTCTCTA
CTTGGATTTTTTCCCCTAAAAATTGTAATCTTATATCATTTATCTATTAT
TGCCTGATTTGTGCCCTTGTGCCTTTTTTGGAGTTCTTTACATATTTTTG
ATTCTACTTTTATCCCACGATTATTAAAATTATTATTATCATTAGTTTAA
AAATGTTGCTATGATGAATAGATGTTTAATTTTAATGTAGCCAAATTCAT
CCATCTTTTTTTTTATGATTTGTGGCTATTGGGCCTTTTTTGAGGAATCT
GTGTAATTTGAAAGTTATAAGACAGACTTTTCTTTTTAAAAAGGTGACTT
ATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_m13.b1 MSMg01no185_m13.b1 CHROMAT_FILE:
MSMg01no185_m13.b1 PHD_FILE: MSMg01no185_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:35 2005
         (632 letters)



>mm_chr10_76373812_76374843
          Length = 1032

 Score = 1185 bits (613), Expect = 0.0
 Identities = 625/629 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttaccgcactggaacatggaatatgaaataaactaagtctgtgtgaccaagca 63
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttaccacactgggacatggaatatgaaataaactaagtctgtgtgaccaagca 263

                                                                       
Query: 64  atgatccttcatatttgattcaggaataaactttctcttgtcccctttgaggtcagagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgatccttcatatttgattcaggaataaactttctcttgtcccctttgaggtcagagct 323

                                                                       
Query: 124 gtatctttttactttaacagtagtctcaatataggagtccagaatccatttttcactaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtatctttttactttaacagtagtctcaatataggagtccagaatccatttttcactaaa 383

                                                                       
Query: 184 ggagacaccaggatgagagccaggtaccagcatgggcccgttgggcccaaccatccaggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggagacaccaggatgagagccaggtaccagcatgggcccgttgggcccaaccatccaggg 443

                                                                       
Query: 244 ttcctaccttgagtggatattgtgagtggacctctcttggcttaaatgatgatctatttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcctaccttgagtggatattgtgagtggacctctcttggcttaaatgatgatctatttg 503

                                                                       
Query: 304 tttattccatgatgatttttacattctacttgttaggtacctttttttggctgctttaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttattccatgatgatttttacattctacttgttaggtacctttttttggctgctttaaa 563

                                                                       
Query: 364 agcatttggtttgaagtatcagtgtggtctgtttgctttgaaagcattttggggtctcac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcatttggtttgaagtatcagtgtggtctgtttgctttgaaagcattttggggtctcac 623

                                                                       
Query: 424 cgttgactgttaatccgctaacattctgtcctttttctctagctcctcatccaatatctg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgttgactgttaatccgctaacattctgtcctttttctctagctcctcatccaatatctg 683

                                                                       
Query: 484 ggaaaggatctgtgaagaaaagctggtactcctattccagctgattttatgtttggtaag 543
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 684 ggaaaggatctgtgaagaaaagctggtactcctattccagctaattttatgtttggtaag 743

                                                                       
Query: 544 tgtatctattcaacttacaagtgttttgtttcattttgttttttgaaaggtagctgaaca 603
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 744 tgtatctattcaacttacaagtgttttgtttcgttttgttttttgaaaggtagctgaaca 803

                                        
Query: 604 tctgctctgcagtggtttgcatgaggaca 632
           |||||||||||||||||||||||||||||
Sbjct: 804 tctgctctgcagtggtttgcatgaggaca 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no185_m13.g1 MSMg01no185_m13.g1 CHROMAT_FILE:
MSMg01no185_m13.g1 PHD_FILE: MSMg01no185_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:35 2005
         (281 letters)



>mm_chr10_76418814_76419494
          Length = 681

 Score =  503 bits (260), Expect = e-147
 Identities = 272/276 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctctgtctccggagtccttgcagctggctcagcctctgcttgcagagcgccatgctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 379 ctctctgtctccggagtccttgcagctggctcagcctctgcttgcagagtgccatgctcc 320

                                                                       
Query: 61  attggctcacctttgctctgtgctgggcccctggaagacagttgtcctggtgcacaccac 120
           || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 319 atcggctcacctttgctctgtgctgggcccctggaagacagttgtcctcgtgcacaccac 260

                                                                       
Query: 121 tgagaccatgggccgcagcccctgttgttggtgtcaattactttccaaaagcttgattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgagaccatgggccgcagcccctgttgttggtgtcaattactttccaaaagcttgattcc 200

                                                                       
Query: 181 cagcctcgggcattctttaatctttagataatagtgctgccaatcaggtaggtctgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cagcctcgggcattctttaatctttagataatagtgctgccaatcaggtaggtctgaaat 140

                                               
Query: 241 atctcacagttttgatttgcatttccctgattacta 276
           ||||||||||||||||||| ||||||||||||||||
Sbjct: 139 atctcacagttttgatttgtatttccctgattacta 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)