BAC Information

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BAC

Clone NameMSMg01-186A15
Chromosome10 (Build37)
Map Location 6,959,342 - 6,959,592
singlet/doubletsinglet
Overlap genePpp1r14c
Upstream geneZbtb2, Akap12, Mthfd1l, Plekhg1, Iyd
Downstream geneEG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186A15.T7 (MSMg01no186_a15.b1)MSMg01-186A15.TJ (MSMg01no186_a15.g1)
ACCAG377848AG377849
length802799
length of high quality
(start - end)
179 (46 - 224)248 (78 - 325)
definitionCHROMAT_FILE: MSMg01no186_a15.b1 PHD_FILE: MSMg01no186_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:54 2005CHROMAT_FILE: MSMg01no186_a15.g1 PHD_FILE: MSMg01no186_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGCACCCCATTTTTCAATCGGNTTATTTGAATT
TCTGGAGTCCAGCTTCTTGATCTCTTTATATATATTGGATATTAGTCCCC
TATCAGATTTAGGATTGGTAAAAATCCTTTTCCAATCTGTTANTGGCCCT
TTTGTCTTATTGACATTATCTTTTGTCTTACANAACTTTGATTTACAGTC
TATTGTCATCTGACTTANCCAACCATTGCGTCTGTCNAATTTTCCCGNCC
CTTTTTCTNTTTTCCCTTCCCCTNNNTTTTTTTTCCCCCCCCCCCCTTTT
TTTGGGGGGCCCGGNCCCNNNNNAAAAAAAACAANNNCNNNNNNNNNTTN
TNNTTTTTTTCCCTTTTTTTTTTTTCCCTTTTTNNNNNTNCTNNNTTCCN
NNNTNTNNTNNCTCTNNNNNNNNTCNNTTTTTTNNNNNNNNNNNNNCTNN
NNNCCCTTCCCTCTTTCCTTTTTCTTTTCTCTTTNTTCTTTNTNNNNNTT
TNNNNNNTNTTATTTTTATTTGGGGGGGGGAGCGGTGTANNNAAATATCG
GGGGGGGGGAAGACTAAGATCTGNNNNNNNNNNNNNNNNNNAAAAANNNN
NNNNNNNNAGGACACCCACGTCCCTTTTTGTCGTNNNNNNNGGGGNCTAT
NCTCTAGCTNNNTTTNCNNNNNTNNTNTNNNNTNNNNCTCNCTCNTCTTT
TTTCTTTCTCNTCTCCTCTCTCTTTTCTTCTTCATGTGGGGGGGGGGGGG
GG
CCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGCGAAACACTGTGCATTT
AAAAAAATAGCCTTTTATTTTTTGGGGTTTATTTGTTTTAGAATGGTCTG
ATAGCAATATAAAAGCTCTAATTCCTAGGCTAACTGCATGTTTGCCCAGA
CTGTCACACATAGGAAAAAATTTTAAATAACTATGATAAACAAAGCTATC
CCAGAAATAAAATTTCCAAAAATACCTTCTTTGTGCTGAGCATTTAACTT
GTAAAAAAAAAAATCAACAAATGCTCTAAATGTAAAAATAGAACTTGTAG
AAAGAGTTCAAGTACTCTTTTTTTTTCCCCCCCCCCCCCCCAGTAAAGAA
AAGAGAAGGCTGGCCTGTCTTCCCCCCCCCCCCAAAAAAAAAAACTCGTC
CCGCGGCCACACCCCGCCTCTAATCCATTCCCCCTCCCGGGTACCCCTAA
TCCCTCACCCTTCTCCCCCTCTCCATCTTCCCCCCCCCCTATACCCCCTC
CTCAATTCCCCCCTTCCAATATCCCCCCAACCCTACTTTCCTTCCCTCAC
TTTCGGCCCCTCACTCTCCCCTCCCCTCCTTTATCTCTCCCCCCCCCACC
TCCCACCTTTCCTCATATATACTCCTCCCTGTACTTCCTCCCTCCATTTT
TCCATTTTTTCTCCTTCCTCTTTTTCCCCCTTTCTTTCCCCCTATTTATT
CCTCTTCCTCCCTCATTACTCTTTTCCCCTACCCTCCCCCCAATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_a15.g1 MSMg01no186_a15.g1 CHROMAT_FILE:
MSMg01no186_a15.g1 PHD_FILE: MSMg01no186_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:54 2005
         (248 letters)



>mm_chr10_6959142_6959789
          Length = 648

 Score =  431 bits (223), Expect = e-125
 Identities = 242/251 (96%), Gaps = 5/251 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtgcgaaacactgtgcatttaaaaaaatagccttttattttttggggtttatttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 201 actgtgcgaaacactgtgcatttaaaaaaatagccttttattttggggggtttatttgtt 260

                                                                       
Query: 61  ttagaatggtctgatagcaatataaaagctctaattcctaggctaactgcatgtttgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagaatggtctgatagcaatataaaagctctaattcctaggctaactgcatgtttgccc 320

                                                                       
Query: 121 agactgtcacacataggaaaaaattttaaataactatgataaacaaagctatcccagaaa 180
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 321 agactgtcacacataggaaaaaaatttaaataagtatgataaacaaagctatcccagaaa 380

                                                                       
Query: 181 taaaatttccaaaaataccttctttgtgctgagcatttaacttgtaaaaaaaaaaa---- 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 381 taaaatttccaaaaataccttctttgtgctgagcatttaacttgtaaaaaaaaaaaaaga 440

                      
Query: 237 -tcaacaaatg 246
            ||||||||||
Sbjct: 441 atcaacaaatg 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)