BAC Information

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BAC

Clone NameMSMg01-186K10
Chromosome10 (Build37)
Map Location 32,444,276 - 32,444,592
singlet/doubletsinglet
Overlap geneTcba1
Upstream genenone
Downstream geneEG667761, Trdn, A330019N05Rik, LOC100040686
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186K10.T7 (MSMg01no186_k10.b1)MSMg01-186K10.TJ (MSMg01no186_k10.g1)
ACCAG378268AG378269
length762803
length of high quality
(start - end)
325 (37 - 361)268 (77 - 344)
definitionCHROMAT_FILE: MSMg01no186_k10.b1 PHD_FILE: MSMg01no186_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:42 2005CHROMAT_FILE: MSMg01no186_k10.g1 PHD_FILE: MSMg01no186_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAC
AGGTGTAATTAATGTCAAGAGCTCCAGCAAGTGGCCTTGCTTTCCTGCTG
GCTTCTCCACCTGCTGCCTTCTGTGACTGCCTTCTCCAGGCTGAGGCCAT
CAGCTGGAAATGAGCATTCAGAATTCATCATTTTACCTCTTGAGAGGCAC
CTGAATCCTCTTCTCAAGTGAACCCTGAGCACATCACTTTATAGGCACAA
TTAGTTAAGTGTTGAGATGCTATCAGAAGTGAACACACTGCTTCCTTAAT
TCATTTTCAATATCTTAAGGTGGATTGTGCCTGTGCATATCATCAGAGAA
AAGAATCTTTTCTCTATACCCCACGCGCAAGTAGAAACTATAAGAAACAG
TACTGTCCCCCCACATGTTAAATACGTGGAAGCATATATATATATATATA
TATATATATATGCATATACATACATATACATTGTGTTTTTATTCATTATC
CCCTCTTTATATCTTATACCTTCTCATATTTTTTTTTCTATCCTTTCTTC
TCCTCCCTTATTTTTCCTTTTGTTTTTACCCAATTTTTTCTTCACTCTTC
TTCTTTCTCTAACTTCATATTTTTATTATTTTATTATCTTTTCATAAACT
TTAACAATAAGAATACACTATAATACCCATTTATTTTTCTTAATATTACC
TTTATTCTATATTATAGTTAGTCACCAGTTCTAAGCATCTTACTTTCTTC
GGGTATCCCTAG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTAGGTTTTCTATCCCCAGA
GTTGTCTCTGTTTGTGATTTCTTCATTGTTTCTACTTCCATTTTTATATC
CTGAATGGTTATGTTCAATTCCTTCCCCTCTTTGGTTGTGTTTTCCTATA
ATTATTTAAGGGATTTTTGTGTTTCCTCTTTAAGGGCTTCTACCTGTTTA
CTTGTGTTCTCCTGTTATCCTTCAAAGGATTTTTGTGTTTCCTCTTTAAG
GGCTTCTACCTTTTTACCTGTGTTCTCCTGTATTTCTTTAAGGGAGATAA
TGATGACTTTTTTTTTTTTCCCCCCCCCCCCCCCCGAAAAAATAGGTAGA
AAGGTATATGGTAGTTTTTTCCCCCCCCAAAAAAAAAAAAAATTTCTCGG
GGCTGTGTGGCTCTTTTTATATTTTTCTTATCCTTATTACTTATACATTT
TTCCTCTAGCCCGTATATATTTTTAATGTTAGTACACAGTTCAATCACTT
TTACATATCTTCTTACCTTTACCGATAATAACATATTACATGAATACATT
TCTAATTCATTACTCTTCTATTCCCCATCTATCTTATTCTTCCCCTCAAC
TTTGTCTCCCACACCTAGTTATTCTCCTCCTACTTATAATTCTCATCCGC
TCTATTTCACTTCCCCCATTCTTCCCACATTATTATTCCTCCCGCCTTAT
CTTTCTATGTTTGACCTCTCTGTCTTTTTTTTATTAATTATTTACTCTTA
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_k10.b1 MSMg01no186_k10.b1 CHROMAT_FILE:
MSMg01no186_k10.b1 PHD_FILE: MSMg01no186_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:42 2005
         (325 letters)



>mm_chr10_32444072_32444796
          Length = 725

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaacaggtgtaattaatgtcaagagctccagcaagtggccttgctttcctgctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattccaacaggtgtaattaatgtcaagagctccagcaagtggccttgctttcctgctg 462

                                                                       
Query: 65  gcttctccacctgctgccttctgtgactgccttctccaggctgaggccatcagctggaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcttctccacctgctgccttctgtgactgccttctccaggctgaggccatcagctggaaa 402

                                                                       
Query: 125 tgagcattcagaattcatcattttacctcttgagaggcacctgaatcctcttctcaagtg 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 401 tgagcattcagaattcatcattttacctcttaagaggcacctgaatcctcttctcaagtg 342

                                                                       
Query: 185 aaccctgagcacatcactttataggcacaattagttaagtgttgagatgctatcagaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaccctgagcacatcactttataggcacaattagttaagtgttgagatgctatcagaagt 282

                                                                       
Query: 245 gaacacactgcttccttaattcattttcaatatcttaaggtggattgtgcctgtgcatat 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gaacacactgcttcctcaattcattttcaatatcttaaggtggattgtgcctgtgcatat 222

                            
Query: 305 catcagagaaaagaatc 321
           |||||||||||||||||
Sbjct: 221 catcagagaaaagaatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)