BAC Information

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BAC

Clone NameMSMg01-187G02
Chromosome10 (Build37)
Map Location 129,650,735 - 129,650,874
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827
Downstream geneNeurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187G02.T7 (MSMg01no187_g02.b1)MSMg01-187G02.TJ (MSMg01no187_g02.g1)
ACCAG378749AG378750
length762744
length of high quality
(start - end)
141 (231 - 371)402 (77 - 478)
definitionCHROMAT_FILE: MSMg01no187_g02.b1 PHD_FILE: MSMg01no187_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:41 2005CHROMAT_FILE: MSMg01no187_g02.g1 PHD_FILE: MSMg01no187_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGGGGGGGNNANNANNANAAGAACCGGCCGGNCCCCCNGCACNNNNN
NGAGTTTAXXXXXXXXXXXXXXXXXXXGAATCATTATTCGNAANGNGGGG
GNGGAANNCNNCAGTTTCTTAAAAGAGAGGNNACAAGAGAGNANAAANAC
AAGGGACAANACAAGNANAATTTAAGCTTGTTTATTAGATACTTCTATAT
TTTTATCCAGTAAAAAGAAAACCCAGGAAATTATCTAGATACTTAAAATA
TAATTTTCATGTAGAGTAAAATGTGTTGATATAATTTAGTGATTATTCTG
GTTAGAATATTTTTTGAGAACTGCATTCCATTACCTAAAGAAAGAGAATG
GCTAAATCTGACTAAAAATATTTTTTTTTTTATTAAAAGNANAGNNNGAG
NNGCANAAACTTTATTATTTTATTTGCTTTAATTTCACTACTTAATAAAT
TTCACAGTATTAAAACTTCTCCAAAAAAAGAATAAAAATTATTTGATATA
TAATATTGATCATTTATAATTATTAATGGAGATAAGTCTTTCAAAGCCCA
TTTTTCATAATTTTGTGTGCAAGATATGAACAACATTGATTTAATGACTA
TTTGTTTAGGTTAGAATAGTCAGCTTTTATTTGTAGATAGATTGAACATT
TTTCTGAATCCAAAGTTATCTACAGTGTGACTTAAATACATGGGGGAGGA
CTTAGCCAGGTTTGTTCTTAAAGCACTTCAATAAGCTCGCTGCGCTATAC
AAGCTCATACCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACCTTTATCA
TGAAGAAGTGTTGGATTTGGTCGACTCCTTTCTCAGCATCTAATGAGATG
ATCATGTTGTTTTGTCTTTGAGTTTGTTTATATAGTAGATTACATTGATG
AATTTCCATAAATTGAACCATCCTTGCATCACTGGGATAAAGCCTACTTG
ATCATGATGGATGATCATTTTGATATGTTCTTGCATTCAGTTTGTGATCA
TTTTATTGAGTATTTTTGCATAATATTCATAAGGGAAATTGTTCTGAAGT
TCTCTTTCTTTGTTGGGTCTTTGTGTGGTTTAGGTATCAGAGTAATTGTG
GCTTCATAGAACAAATTGGCCCCAATACCTTCTGTTTCTATTTTGTGGAA
TAGATGGAGGAGAATTGGAATTAGGTCTGCTCCTTTTGGCACCCAGTTTT
TTTACCCTTGCCTCTATGCCTTTACTGATTCCCCCACCCGCTCTACCCCC
TTTTTTTTTTTTTTTCTTATCCCCCCCTTTTCTTTACTTCCCCTGCAAAA
AACCATCATTTTACTCTCTCCTTTTCCCCCCTTTCTTTCCCTTTTTTTTC
TTTCCCTACACCTTCTATGATGACCCTCTTTTTTTTCTCTCTTTTTTCCC
CACCCTTTTTTCTTCCTCTTTTTTTTTCCTTTCCACTTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_g02.b1 MSMg01no187_g02.b1 CHROMAT_FILE:
MSMg01no187_g02.b1 PHD_FILE: MSMg01no187_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:41 2005
         (141 letters)



>mm_chr10_129650535_129651075
          Length = 541

 Score =  240 bits (124), Expect = 3e-68
 Identities = 136/140 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatctagatacttaaaatataattttcatgtagagtaaaatgtgttgatataatttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttatctagatacttaaaatataattttcatgtagagtaaaatgtgttgatataatttagt 281

                                                                       
Query: 61  gattattctggttagaatattttttgagaactgcattccattacctaaagaaagagaatg 120
           |||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||
Sbjct: 280 gattattctggttagaataagctttgagaactgcattccattatctaaagaaagagaatg 221

                               
Query: 121 gctaaatctgactaaaaata 140
           ||||||||||||||||||||
Sbjct: 220 gctaaatctgactaaaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)