BAC Information

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BAC

Clone NameMSMg01-188C15
Chromosome10 (Build37)
Map Location 62,085,560 - 62,085,877
singlet/doubletsinglet
Overlap geneDdx50
Upstream geneNpffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21
Downstream geneStox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188C15.T7 (MSMg01no188_c15.b1)MSMg01-188C15.TJ (MSMg01no188_c15.g1)
ACCAG379272AG379273
length740773
length of high quality
(start - end)
315 (63 - 377)---
definitionCHROMAT_FILE: MSMg01no188_c15.b1 PHD_FILE: MSMg01no188_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:43 2005CHROMAT_FILE: MSMg01no188_c15.g1 PHD_FILE: MSMg01no188_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCCCCNNNNCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCACTGTGCAGGCTGGGTTGGCCTAGAACT
CACAGAGATTCCCCTTGCTCAGGCATGCACCACTGTGTACCATCTGGTGC
ATTTTATTTTATTTTAGAGATAAAGTCTTATATATCTCAGGTTGGACTTG
AAGTCACAACAGTTCTTCTGCTTCAGCCTCTCAAATACAAAAACAATTTT
TAGGGCAGATGGTGGTAGTGCCTCTCCCAGGAGACAGAGTCAGGGGATCT
CTGAGTTCAAGGATAGCCAAAGCTGTACAGAGAAATCCTGTCAAACTAAA
CAACCAAAAAAAAAAAAACAATTTTTATTTTGTACTCCCCCCCACAATGT
TAAGGTACTTTTGAGGTCACTTATAGCTAATCCCTGTCCCGTGAAAATTC
TTTGATTGGCCACAGAAATGCTTATCTGCATTCACAGTACTTGGCAAGCA
GAGGTAGGAGAACTGCAAGTCTGAGGCCAGCCTGACCAAGAACCATTTAT
TAGATAGGTCATTTGACTTGCAATTAAGTATTTTGGGAACAAGGTATTAA
TGGCTTGAAATTTTTCCCCTTCCCTCCCTCCCTTCCTTCCCTTTCCTCTC
TTTCCATTCTTCTCCTTCTTTTCTCATATTCTTTTTCCCCTTCCTTTTCT
TTTTTCTCCCCCTTCTCCTCTTCTTTTCACCATAATACCT
TCCCCCCCCTCCTTCTCCCCTTTAACTTACACCANACTACATNNNNNNNN
TTCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGGGCGGGGAACCAACTG
GCTCTTCCAAAGCTCAATTCCCAGCAATCCCGGGGGGACTCACAAACTTC
GGAAAGGAAATCCAAGGCTCCCTCTGGCCAGGAACCAGGAATAGGCCCCC
AAAACACCCTTACTTAATAAATTTTAAAAAAAGGAGTTCAGGGCTATCCG
GGGGAAAGCAATTTGACAAAAAGGGAAGGGAATCAAACCACCCGGGGAAG
AACACAAGGGGAAAAACACAAAGGGTCTTGGTTGAACCCGCTAAATCACA
AACTCGGGTTTTTTTTTTTCTCCCCCCCCCCAAAAGAAGCAAAGCCGTAA
AGCCAAAAACCCCTGGAAAACACACAAAATAATGGGCCCTTCCGTGGCCC
CCTTCCTTGGCTCCGGTCCCCAACAAAAACTAAATCTAACCTGGACTCAA
AAAATAAAAAAGGGCCTTCCCTCCCTAACCTCCCCCCCCCCCAGGCTTCT
CCTCCTAATTCCCCCTTTTTCTTTGGAAAAAAAATCCCACTATAACCCCA
GCTTATCCCGGAATTCCCGAAAACTGGTCGCGGCTTAAATTCACAGATCC
CCCGGCCCTTGGACCTTGAGTGCCTAAAAAACCACCAAGTCCGAACCTCT
TTCTAATTTCTGTCCCCGCATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_c15.b1 MSMg01no188_c15.b1 CHROMAT_FILE:
MSMg01no188_c15.b1 PHD_FILE: MSMg01no188_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:43 2005
         (315 letters)



>mm_chr10_62085418_62086132
          Length = 715

 Score =  572 bits (296), Expect = e-168
 Identities = 310/318 (97%), Gaps = 6/318 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgtgcaggctgggttggcctagaactcacagagattccccttgctcaggca 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 460 ggaattcactgtgcaggctgggttggcctagaactcacagagattccccttgctcaggga 401

                                                                       
Query: 64  tgcaccactgtgtaccatctggtgcattttattttattttagagataaagtcttatatat 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 400 tgcaccactgtgtaccatctggtgtattttattttattttagagataaagtcttatatat 341

                                                                       
Query: 124 ctcaggttggacttgaagtcacaacagttcttctgcttcagcctctcaaatacaaaaaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctcaggttggacttgaagtcacaacagttcttctgcttcagcctctcaaatacaaaaaca 281

                                                                       
Query: 184 atttttagggcagatggtggtagtgcctctcccaggagacagagtcaggggatctctgag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atttttagggcagatggtggtagtgcctctcccaggagacagagtcaggggatctctgag 221

                                                                       
Query: 244 ttcaaggatagccaaagctgtacagagaaatcctgtcaaactaaacaacc------aaaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||
Sbjct: 220 ttcaaggatagccaaagctgtacagagaaatcctgtcaaactaaacaaccaaaaaaaaaa 161

                             
Query: 298 aaaaaaaaacaattttta 315
           ||||||||||||||||||
Sbjct: 160 aaaaaaaaacaattttta 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)