This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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BAC name
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search by nearby gene name.
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Search Result
BAC
Clone Name
MSMg01-188E15
Chromosome
10 (Build37)
Map Location
50,049,464 - 50,079,218
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Grik2
Downstream gene
LOC629652
,
Ascc3
,
Sim1
,
LOC268300
Link
Open Mouse BAC browser
Click to get alignment info.
name
Grik2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14806
MGI:95815
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC629652
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:629652
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins
pseudo
: _no_value
name
Ascc3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:77987
MGI:1925237
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 65 ESTs, 5 Proteins
name
Sim1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:20464
MGI:98306
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC268300
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:268300
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 356 ESTs, 12 Proteins
pseudo
: _no_value
name
Grik2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6754073
GeneID:14806
MGI:95815
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: glutamate receptor, ionotropic, kainate 2 (beta 2)
transcript_id
: NM_010349.1
name
Ascc3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94387974
GeneID:77987
MGI:1925237
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 65 ESTs, 5 Proteins
product
: activating signal cointegrator 1 complex subunit 3, transcript variant 1
transcript_id
: XM_125617.7
name
Sim1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142361519
GeneID:20464
MGI:98306
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: single-minded homolog 1 (Drosophila)
transcript_id
: NM_011376.2
name
Grik2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6754074
CCDS:CCDS23830.1
GeneID:14806
MGI:95815
definition
GO_component
: GO:0008328 - ionotropic glutamate receptor complex [Evidence IC]; GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA]; GO:0045202 - synapse [Evidence TAS]
GO_function
: GO:0005234 - glutamate-gated ion channel activity [Evidence IEA]; GO:0042802 - identical protein binding [Evidence TAS]; GO:0005216 - ion channel activity [Evidence IMP]; GO:0004970 - ionotropic glutamate receptor activity [Evidence IEA]; GO:0015277 - kainate selective glutamate receptor activity [Evidence IMP]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0006811 - ion transport [Evidence IMP]; GO:0007268 - synaptic transmission [Evidence IMP]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: glutamate receptor, ionotropic, kainate 2 (beta 2)
protein_id
: NP_034479.1
name
Ascc3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82932285
GeneID:77987
MGI:1925237
definition
codon_start
: 1
product
: activating signal cointegrator 1 complex subunit 3 isoform 1
protein_id
: XP_125617.5
name
Sim1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7106403
GeneID:20464
MGI:98306
definition
GO_component
: GO:0005634 - nucleus [Evidence IDA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046982 - protein heterodimerization activity [Evidence IPI]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IDA]; GO:0000155 - two-component sensor activity [Evidence IEA]
GO_process
: GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0000160 - two-component signal transduction system (phosphorelay) [Evidence IEA]
codon_start
: 1
exception
: unclassified translation discrepancy
note
: single-minded 1
product
: single-minded homolog 1
protein_id
: NP_035506.1
name
LOC629652
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:629652
definition
number
: 1
pseudo
: _no_value
name
LOC629652
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:629652
definition
number
: 2
pseudo
: _no_value
name
LOC629652
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:629652
definition
number
: 3
pseudo
: _no_value
name
LOC629652
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:629652
definition
number
: 4
pseudo
: _no_value
name
LOC268300
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149260759
GeneID:268300
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 356 ESTs, 12 Proteins
product
: similar to ribosomal protein L7a
pseudo
: _no_value
transcript_id
: XR_033530.1
clone name
MSMg01-364M08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-132G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096G10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-171D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-428E03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-539H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-199G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-175N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-307M11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-510O20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-231O10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-052K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-158C07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-517F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-456F19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541D05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-196G07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-505F23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-482P10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-174K09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-108G10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-067B03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-499I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513A15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270D20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-485M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394I11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-119C02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147P02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-045G20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535G05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062E12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-111P22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-070C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-197F05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-491J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546D19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353I12
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-142D21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-188E15
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-477D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-435N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-335B10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-545C06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-332D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-333E16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-395J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-150E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-534K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-094N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-318B22
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-269G23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-260D05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442P24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-266A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-455J10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434F10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-340B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-401H07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-086O05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080K18
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-057B20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-136E07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-426N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-410D20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526E12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541B01
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-502O09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-171J19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-102O12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-415J22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273A05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-388F15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-135B04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-381K05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-129H16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-487C08
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-129H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-450M09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-337I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-455N01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523B19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-446O21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-359G08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402L15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-050L20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-453J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-475J19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170K20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-422K19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-195P04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-168N18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-235J03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-260F04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-161J12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-095O22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-040E03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-263B22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-276I10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-116A21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-158D07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-204A18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-263J02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-110L13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-256O05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-336A14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-069I10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-180K22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-084C13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-242G05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-139N24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-337P06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-138L12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-114D22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-078K03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-332I12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-216D02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-039I18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-093J10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-212M20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-188I14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-213D12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-205L23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-173E02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-248K12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-297N13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-023N01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-024C23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-118M14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-299A01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-054O09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-019H02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-211F07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-349I24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-080C06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-052L01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-154F08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-103P13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-104E18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-294F22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-322J15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-074M12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-088B09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-206I15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-190B16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-148B10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-193N01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-285C20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-337I23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-163C16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-243D21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-036F17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-335P13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-307F11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-242L11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-218I10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-084B21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-165E01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-329E21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-202H12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-331J06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-032K20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-212P02
singlet/doublet
singlet
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unique
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B6Ng01-338L01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-238A19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-276N09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-269P20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-299B03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-244K08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-126E15
singlet/doublet
singlet
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unique
clone name
B6Ng01-219H10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-113K03
singlet/doublet
doublet
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unique
clone name
B6Ng01-189D16
singlet/doublet
doublet
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unique
clone name
B6Ng01-191I10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-144G16
singlet/doublet
doublet
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unique
clone name
B6Ng01-172N19
singlet/doublet
doublet
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unique
clone name
B6Ng01-318K22
singlet/doublet
singlet
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unique
clone name
B6Ng01-277C19
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singlet
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unique
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B6Ng01-327I14
singlet/doublet
singlet
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unique
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B6Ng01-032O03
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unique
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B6Ng01-180A20
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doublet
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unique
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B6Ng01-021J15
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doublet
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B6Ng01-300J20
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singlet
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unique
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B6Ng01-009F03
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singlet
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B6Ng01-017E23
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B6Ng01-303B14
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doublet
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unique
clone name
B6Ng01-350P13
singlet/doublet
singlet
plural/unique
unique
