BAC Information

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BAC

Clone NameMSMg01-189B04
Chromosome10 (Build37)
Map Location 102,092,970 - 102,198,855
singlet/doubletdoublet
Overlap genenone
Upstream geneMgat4c, LOC667652, Nts, Pamci
Downstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189B04.T7 (MSMg01no189_b04.b1)MSMg01-189B04.TJ (MSMg01no189_b04.g1)
ACCAG379880AG379881
length725738
length of high quality
(start - end)
319 (47 - 365)625 (91 - 715)
definitionCHROMAT_FILE: MSMg01no189_b04.b1 PHD_FILE: MSMg01no189_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:57 2005CHROMAT_FILE: MSMg01no189_b04.g1 PHD_FILE: MSMg01no189_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,092,970 - 102,093,283)(102,198,231 - 102,198,855)
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCATAGTGATAGACTTCAACTGAAACTGAAATCTTACTCAATT
GAACTAGCTGAATGACACAGTTTTGCACAACTATGTGGTAATTCCTGTGA
AATATTTATTGAAATAATAATTCTTTTAAAATTAAATGCTAAGCAATTTT
TTATCAAACTATATGTATGGTGAATATTTAAAGAGGTCACTGGGACATGT
TTTACTTACTTGTGAACAATGTGAGCTGGAGAGGAGATGCCAAACATGAG
TGGCACATTTTAAACTTGAAAAATATTAAGGTCAGGATTTTACAAGATGA
CTGCTTTGCACTTCTTAGTTGGAAACAGAACCAATTCATCACAACAGTAT
AAAAACTATAACATAAAAGAGAAACAGCTTCATAGCTATGGACTAGAAAT
GGAAAACAAGTTTACACCCCAGAGACAATACACTGGCCATCTGTTTGCCC
ATGAATACCCATCCAGTTATTTAAAGGCAACTCTGTTACCATGGGAACAG
CTGTATTATATTTTTTTCACTCTTCTAACAGGTAATAGGTTCTACCAGTC
TGAAAACTTAATCCATTATCCAGAGGAATAGATCATGGCTCATGTCAGAT
GAACAATTTTACCCTCAAGCATTTTTTAAGATTCCAATTAAAGAAAACTT
TTTTTTTTTTCATTTTGGCGCTGAG
NTTTTTTTTTTATTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGAATCT
GCTATCTTTTACTTTAACTGATGGAAGACTCTCCATATTCCAATACCTTT
TGATTTCTTCAGAAAGCAGTGATTGTTAGAGGACAAGATTAAGCAGATTC
CAAATGGTGGTAAGACCCCTACCTAGACAACAGAGAGACAAACTATGTTT
TCTCTGAAAGAATATAAAAGGTTGAAGCAGCAGATGTACACATAAAAGGA
AAGTATCTGAAGTCTCAATAAAAATTTGAAGGAGTGTAAGTGCCAGTTAG
AGGATGCCTCGCCCCTCCTTCCTCATTAGTTCCTTTTACTACAAATAACC
AGGCAAGCAACTACCCTTCGGGCTTCTATTGGTGTGTTTAGTGTGGTGTC
AAGGAAGGGTCCCCTTGGAATCTGCTCAGTTTATAGGCATGCAAATGGGA
CTAGAAGGCATGCACAAAATCCTGTTTCTATACTCCTAGCAAACTCCCCA
AATGCTGCAGCTATGACAAGATGATCCTTGCCAGGATTTTCCCGTTTGAA
GTGCTACAGAACTGGTACTACACCCAGTTTACTGAAACTCAGTCTGAAAT
AAGAAGCAAGGGAAATCCCCTGACACCACTCTGGGGCAAGCATCAGACAA
AAAGCTGAGAGAACCTGCCAGAGAGCATTGAGAGGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_b04.b1 MSMg01no189_b04.b1 CHROMAT_FILE:
MSMg01no189_b04.b1 PHD_FILE: MSMg01no189_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:57 2005
         (319 letters)



>mm_chr10_102092766_102093484
          Length = 719

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccatagtgatagacttcaactgaaactgaaatcttactcaattgaactagctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatagtgatagacttcaactgaaactgaaatcttactcaattgaactagctg 264

                                                                       
Query: 65  aatgacacagttttgcacaactatgtggtaattcctgtgaaatatttattgaaataataa 124
           ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 265 aatgacacagttttgtacaactatgtgataattcctgtgaattatttattgaaataataa 324

                                                                       
Query: 125 ttcttttaaaattaaatgctaagcaattttttatcaaactatatgtatggtgaatattta 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 ttcttttaaaattaaatgctaagcaatcttttatcaaactatatgtatggtgaatattta 384

                                                                       
Query: 185 aagaggtcactgggacatgttttacttacttgtgaacaatgtgagctggagaggagatgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaggtcactgggacatgttttacttacttgtgaacaatgtgagctggagaggagatgc 444

                                                                       
Query: 245 caaacatgagtggcacattttaaacttgaaaaatattaaggtcaggattttacaagatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaacatgagtggcacattttaaacttgaaaaatattaaggtcaggattttacaagatga 504

                         
Query: 305 ctgctttgcacttc 318
           ||||||||||||||
Sbjct: 505 ctgctttgcacttc 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no189_b04.g1 MSMg01no189_b04.g1 CHROMAT_FILE:
MSMg01no189_b04.g1 PHD_FILE: MSMg01no189_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:57 2005
         (625 letters)



>mm_chr10_102198031_102199055
          Length = 1025

 Score = 1123 bits (581), Expect = 0.0
 Identities = 614/625 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggaatctgctatcttttactttaactgatggaagactctccatattccaataccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ttaggaatctgctatcttttactttaactgatggaagactctccatattccaataccttt 766

                                                                       
Query: 61  tgatttcttcagaaagcagtgattgttagaggacaagattaagcagattccaaatggtgg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 765 tgatttcttcagaaagcagtgattgttaggggacaagattaagcagattccaaatggtgg 706

                                                                       
Query: 121 taagacccctacctagacaacagagagacaaactatgttttctctgaaagaatataaaag 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 705 taagacccctacctagacaacagagagacaaactattttttctctgaaagaatataaaag 646

                                                                       
Query: 181 gttgaagcagcagatgtacacataaaaggaaagtatctgaagtctcaataaaaatttgaa 240
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gtagaagcagcagatggacacataaaaggaaagtatctgaagtctcaataaaaatttgaa 586

                                                                       
Query: 241 ggagtgtaagtgccagttagaggatgcctcgcccctccttcctcattagttccttttact 300
           |||||||||||||||||||||||||||||| ||||||||||||||  || |||||||| |
Sbjct: 585 ggagtgtaagtgccagttagaggatgcctcacccctccttcctcaccagctccttttaat 526

                                                                       
Query: 301 acaaataaccaggcaagcaactacccttcgggcttctattggtgtgtttagtgtggtgtc 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 525 acaaataaccaggcaagcaactaccctgcgggcttctattggtgtgtttagtgtggtgtc 466

                                                                       
Query: 361 aaggaagggtccccttggaatctgctcagtttataggcatgcaaatgggactagaaggca 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaggaaggggccccttggaatctgctcagtttataggcatgcaaatgggactagaaggca 406

                                                                       
Query: 421 tgcacaaaatcctgtttctatactcctagcaaactccccaaatgctgcagctatgacaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgcacaaaatcctgtttctatactcctagcaaactccccaaatgctgcagctatgacaag 346

                                                                       
Query: 481 atgatccttgccaggattttcccgtttgaagtgctacagaactggtactacacccagttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atgatccttgccaggattttcccgtttgaagtgctacagaactggtactacacccagttt 286

                                                                       
Query: 541 actgaaactcagtctgaaataagaagcaagggaaatcccctgacaccactctggggcaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 actgaaactcagtctgaaataagaagcaagggaaatcccctgacaccactctggggcaag 226

                                    
Query: 601 catcagacaaaaagctgagagaacc 625
           |||||||||||||||||||||||||
Sbjct: 225 catcagacaaaaagctgagagaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)