BAC Information

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BAC

Clone NameMSMg01-189B17
Chromosome10 (Build37)
Map Location 129,035,160 - 129,035,467
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739
Downstream geneOlfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189B17.T7 (MSMg01no189_b17.b1)MSMg01-189B17.TJ (MSMg01no189_b17.g1)
ACCAG379905AG379906
length739731
length of high quality
(start - end)		314 (46 - 359)234 (129 - 362)
definitionCHROMAT_FILE: MSMg01no189_b17.b1 PHD_FILE: MSMg01no189_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:59 2005CHROMAT_FILE: MSMg01no189_b17.g1 PHD_FILE: MSMg01no189_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAGTGAGGAATAGCAAAGGGCTGAGAAGCACCTGAAAAATGTT
CAACATCCTCGATTAGAATATTCTAGTTCTTTTGCATTGTCTTCAAGCCC
TGATAATTTGTCTCCCACTTGATTTATTTTGCTAGAGAATCTTTCTGCTC
TGATTTGTATTTGACTTACTGAATATTTTGTTTGCTATATTTCAGATGTA
TTTATTTATGTTTTTATATCCCCCCTCTTTCTCCCTCTTTCTTTCTCTCT
CTCTCCTACTTCCTCTTTAATAACCCTTATTGCCTTCTGTACTGGTTCAT
TTTATGTTTTTTTTTCACCACACCTTTGGAACCACAATTGAGAAAATAAC
CTCACCAGATTGGTATGGAGATATTGTATTGACTGATATTAGACATGGGA
GGGCCCAGGACACTGAGTGGTGCATCCCTTGGGCAGGTGGTCTTGGGTAT
TGTAAGAAAGCAGGCTGAGCAAACCATCCAAAGTTTTTTTTGTTTGTTTG
TTTTGTTTTTTTGGTTTTTTTCCTAAACAGGATTGCTCTATGTAATTCTG
GTTGCCCTGGGACTCATAATGTACATCAGGCCTGTTCTTGACCTAATCTG
CTTATCTCTTCTGCGAAGGTTACGTCATTAAAGGTGAGTATCCACCTTTT
AGTCCGTGTCTTCTTTCAACCTCATGTTTTGCTCCCCTG

TCATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATATTGTTCTTCCTATGGGGCTGC
AAACCCCTTTAGCTCCTTGTTATACCCTTTCTAGCTACTTCATTGGTGAC
CCTGTGCTCTGTCCAGTGGATGGATGTATATGTATTGGGGGCCTCATATC
AGGTGGTGTATGCTGCCTGGTTGGTGATCCAGTGTCTGAGAGATCTCAGG
GGTCCAGGTTAATTGAGACTGCTGATCCTCTTACAGAGTCATCATCCTCT
TCAGCTTCCTCCAAGTTTTCCTTAATTCAACCACAGGGGTCAGCAGCTTT
TGTCCATTGGTTGTTTTATTTTTATCTGCACCTAACTCTTTCAGCTGCTT
GTTGGGTCTTTCAGAGAACAGTCATGATAAGAACCTTTTCGTGAGCATTC
CATAGCCTCAGTAGTAGTGTCAGGCCTTGAGGCCTCCCCTTGAGCTGATT
CTACTTTGGGCCTGTCACTGGACCTTCTTTTCCACAGACTCATCTCTATT
TTTGTCCCTGCAGTTCTTTCAGATGGAAACAATTATAGGTCAAAGGTTTT
GACCATGGGATAGCAACCACATCCCTCACTTGCTACCCTGTCTTTCTGCT
GGAGGTGGGCTCTACAAGTTCCTTCTTTGCCCTATAGGACATTTCATCTA
ATGTCCCTTCCTTTAAGTCCTGAGAGTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_b17.b1 MSMg01no189_b17.b1 CHROMAT_FILE:
MSMg01no189_b17.b1 PHD_FILE: MSMg01no189_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:59 2005
         (314 letters)



>mm_chr10_129034956_129035669
          Length = 714

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaagtgaggaatagcaaagggctgagaagcacctgaaaaatgttcaacatcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaagtgaggaatagcaaagggctgagaagcacctgaaaaatgttcaacatcct 264

                                                                       
Query: 65  cgattagaatattctagttcttttgcattgtcttcaagccctgataatttgtctcccact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgattagaatattctagttcttttgcattgtcttcaagccctgataatttgtctcccact 324

                                                                       
Query: 125 tgatttattttgctagagaatctttctgctctgatttgtatttgacttactgaatatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatttattttgctagagaatctttctgctctgatttgtatttgacttactgaatatttt 384

                                                                       
Query: 185 gtttgctatatttcagatgtatttatttatgtttttatatcccccctctttctccctctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttgctatatttcagatgtatttatttatgtttttatatcccccctctttctccctctt 444

                                                                       
Query: 245 tctttctctctctctcctacttcctctttaataacccttattgccttctgtactggttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttctctctctctcctacttcctctttaataacccttattgccttctgtactggttca 504

                   
Query: 305 ttttatgt 312
           ||||||||
Sbjct: 505 ttttatgt 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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