BAC Information

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BAC

Clone NameMSMg01-189D07
Chromosome10 (Build37)
Map Location 44,844,384 - 44,844,623
singlet/doubletsinglet
Overlap genePrep
Upstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974
Downstream genePopdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189D07.T7 (MSMg01no189_d07.b1)MSMg01-189D07.TJ (MSMg01no189_d07.g1)
ACCAG379969AG379970
length780731
length of high quality
(start - end)
316 (101 - 416)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no189_d07.b1 PHD_FILE: MSMg01no189_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:07 2005CHROMAT_FILE: MSMg01no189_d07.g1 PHD_FILE: MSMg01no189_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCTCTTCTCTTTCTTCGCCCTTCCTTACATTTTTTCACTTANNNNNNN
CCATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAATAAAGAAAACACAAATTGCTGAGAAACACTTAACTA
TTCAACATCCTTATCCATCAGAGAAATGCAAGTCAAAATTACTTTGAGGT
TCTATCTTACACCTGTCAGAATGGCTAAGATCAATTTCTCAAGTGACAGC
TCATGCTGGCCAGAATGTAGAGAAAGGAGAACATTCCTCTATTGCTGGTG
GGAGTGAAAACTTTTACAGTCACTATGGAAATCAATATGATGGCTTCTCA
GAAAGTTGAGAAATGACCTACCTAAGACCCAGCTATACCAATCTTGGGCA
TATACCTAAAGGATGTTTTTTTCCTACCACCCCACTACTTGTTCAAACAT
GTTTATTGAAGCTTTATTCATAGTACCCAGAAACTGGAAGGAACCTAGAT
GCCCCTCAACAGAAGAATGGATAAAGAAAATATGATACACTTATACAATG
AAGTGATGCTCATCCATTAAAAAACAAATGACATCATAAAATTTTCAGAT
AAATGAATTGAAGTATAAAAATCATCCTGAGTGAGTAACCCAGCACCGGA
AACACAAATATGGTATATATTTACTTATTCGTGCACGTTAGTTATTACGT
ACATGAAAATCTATCCACCATCTATAGAGTTCTACAGGTTATGTAAGAGG
AGGTGCCTATGCAAATCTTGTATCTCCCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTATGTAATCAATAATAAAA
GTTCTAATTCCTGGAATTATTTCATCTCTCTTAATATTTAAGTCAAAGAA
ACAAGACAAGAGTAGTGCCATGTTGAGGAATGAGCCAGAGAGGCTAGTGT
GGAAACGGTACCTCACGTACTTTAAGTAGACATTGTCAAGTGTAAGGAAA
ACTGATCCTGGGATCTCAGTGCTTGCTGGGAAACCAGAAGCCAAATAGGA
GTCCCACAGGACTGAGAGAGACGGACTGATCATGGGTTAAAACAGCAGCT
CTCTTTCCCCTCAATCTTTCTTCACCCCCCAATGTAGGCATTTCCCTAGC
AACGTGAGAACCAACACTCAGTACATGTAATATAAATGCATGAGAGTTAG
TGAGGGATTTTGTTGTTTGCTTGTTTTGTTTTTCAGATCACTTACGGGTA
CCCCCTACATCCATGGACAAATCTGACTCTTGTGGCTAGGGGTGTTTCGT
CTCATCTCTTTTCTGAAGGGAAGCACCGTGTTCCGCTTCCAGAGTTAAAA
GATTTTGTTGCTGCTGGTCTGTACTGTATGACACATTTATAATTTTTATC
TTTTATGTTTTACCTTACCACGCTTGTGCCCCTTTTTCTCTGGATTCCGC
TTGATGTCGACACTTTTTATTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_d07.g1 MSMg01no189_d07.g1 CHROMAT_FILE:
MSMg01no189_d07.g1 PHD_FILE: MSMg01no189_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:07 2005
         (241 letters)



>mm_chr10_44844184_44844823
          Length = 640

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%), Gaps = 1/241 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtttatgtaatcaataataaaagttctaattcctggaattatttcatctctcttaata 60
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 440 cagtttatgtaatcaataataaaagttctaattcctggaattagtacatctctcttaata 381

                                                                       
Query: 61  tttaagtcaaagaaacaagacaagagtagtgccatgttgaggaatgagccagagaggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttaagtcaaagaaacaagacaagagtagtgccatgttgaggaatgagccagagaggcta 321

                                                                       
Query: 121 gtgtggaaacggtacctcacgtactttaagtagacattgtcaagtgtaaggaaaactgat 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgtgg-aacggtacctcacgtactttaagtagacattgtcaagtgtaaggaaaactgat 262

                                                                       
Query: 181 cctgggatctcagtgcttgctgggaaaccagaagccaaataggagtcccacaggactgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgggatctcagtgcttgctgggaaaccagaagccaaataggagtcccacaggactgag 202

            
Query: 241 a 241
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 640
Length adjustment: 9
Effective length of query: 232
Effective length of database: 631
Effective search space:   146392
Effective search space used:   146392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)