BAC Information

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BAC

Clone NameMSMg01-189I15
Chromosome10 (Build37)
Map Location 57,166,270 - 57,166,522
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189I15.T7 (MSMg01no189_i15.b1)MSMg01-189I15.TJ (MSMg01no189_i15.g1)
ACCAG380192AG380193
length750709
length of high quality
(start - end)
317 (57 - 373)237 (128 - 364)
definitionCHROMAT_FILE: MSMg01no189_i15.b1 PHD_FILE: MSMg01no189_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:32 2005CHROMAT_FILE: MSMg01no189_i15.g1 PHD_FILE: MSMg01no189_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAAAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCATGCACGTTCTCCGGGTAGAACAAAACAGCCT
ATTCAACCCACCCCTCATCCCACAAAACAGCACACAAACACACAAACAAA
TTTTGTTAAAATCAATAAACTTTATTGAAAGCAATGGAAACAAACTACAC
AAAACCAAACCAAACCCAACAAAGCCAACCCACCCCTAAAAAAAAGAAAA
AGAAAAAAAATGAAAAAGAAAGTGAAAAAGAAAAAGAAAACAAACAAAAG
ACCTATGGGTAGTAGATATTAAAAGACTGGCCTGTAAAACCTTGCACAGC
TCTGCACGAAGCATCTGTAAGGATATTTATCAGTCCACACACCCCAAGGA
AGGAGTCCACTCTCCCCATTGCCCTCAGGGAGTGTGTGTCCTCTGTAGTG
AAGCCTAGTCCTAGTGTCCCGTGTGATTTCCTGGGGTCCACTGGAGCCAT
TCACTTGGTGTGGCCCTTCTTTTGGGGTTATCTTTAGGCTCCTTGTTGTT
GAGGAGTCACTATTGGCCTCTCCATCTGTCCCTGTAGCAGAGTCTCTCAC
TTTCAGGGCTGATTTCCTAATCCCCGGGCCCTGGAGAAGGCACTTCATTA
TTATCCCCACCTGCAATCAATCCTTATAGTTAGCGAGACACCTTGCATTT
CGGGAAGTCACTGGAGCTGGGTTTTTGATGCACATCCTTGCTGGGATGCG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCGGTGGCGGGGGGGGGGGGGAC
TATAAGGAAAGCTAAGATTTCTCATGCAGTATTTTCAATCATGAATATAA
TAGAAATGCTGAATATATACTGTACATGTACGGACATGTTTTAAATGTTT
TAAGTCCAAGGAAGTTTTGGGATGCTCTGGAGTTTTGTTTTTATAAATTA
CTATTATCATTCCTGTGGTTTAAAGGAAGAAACTAAGACTTAGTGGGTAC
ATATTACACAAGAGAAATGAATACTAAACTAGGCCTAGGGTTTCCCTGAG
TGGAGAATCCTATTTACTTTTATGCATTTACATAAAATACATAATTTGCC
TATATACAAACTCTGAAGGTCTCAATTTTTACAATATTTTTTAATTAGCT
ATGTGTGTAAGAGGTATATGCATGTGAGTATGGATGACCTAGAGGCCAAA
AGTGCCAGATACCCTGATATTGGAGTTGTAAGCAGCCATGAATAGAGTAG
TATTAGGTGCTAGAAACCAAAATAGGGTCCTCTACAAGAGCAATACTGTT
CTTAAACACTGAGTCATCTTTCTATCCTTATCCCTTTTCCAGCCAATGTT
TTCTGATGTATACTATCAGGAGTTTTAAAATACTTCAGGATGTACACACT
CCCTCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_i15.g1 MSMg01no189_i15.g1 CHROMAT_FILE:
MSMg01no189_i15.g1 PHD_FILE: MSMg01no189_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:32 2005
         (237 letters)



>mm_chr10_57166088_57166724
          Length = 637

 Score =  364 bits (188), Expect = e-105
 Identities = 229/254 (90%), Gaps = 20/254 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtattttcaatcatgaatataatagaaatgctgaatatatactgtacatgtacggacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 183 agtattttcaatcatgaatataatagaaatgctgaatatatactgtacatgtaaggacat 242

                                                                       
Query: 61  gttttaaatgtttt------------------aagtccaaggaagttttgggatgctctg 102
           ||||||||||||||                  ||||||||||||||||||||||||||||
Sbjct: 243 gttttaaatgtttttacacagtccattcctttaagtccaaggaagttttgggatgctctg 302

                                                                       
Query: 103 gagttttgtttttataaattactattatcattcctgtggtttaaaggaagaaactaag-a 161
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 303 gagttttgtttttataaattactattatcattcctgtggtttaaaggaagaaactaagga 362

                                                                       
Query: 162 cttagtgggtacatattacacaagagaaatgaatactaaactaggcctagggtttccctg 221
            ||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 363 -ttagtggatacatattacacaagagaaatgaagacaaaactaggcctagggtttccctg 421

                         
Query: 222 agtggagaatccta 235
           ||| ||||||||||
Sbjct: 422 agttgagaatccta 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)