BAC Information

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BAC

Clone NameMSMg01-190I02
Chromosome10 (Build37)
Map Location 85,295,745 - 85,296,078
singlet/doubletsinglet
Overlap genenone
Upstream geneRfx4, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940
Downstream genePwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190I02.T7 (MSMg01no190_i02.b1)MSMg01-190I02.TJ (MSMg01no190_i02.g1)
ACCAG380827AG380828
length716945
length of high quality
(start - end)
320 (46 - 365)---
definitionCHROMAT_FILE: MSMg01no190_i02.b1 PHD_FILE: MSMg01no190_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:46 2005CHROMAT_FILE: MSMg01no190_i02.g1 PHD_FILE: MSMg01no190_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGGCACAGCTGTTATTTTTAAGTTTCTACTGCTGTGAAACATGA
GGTTCGTGGCGTCTCTCTTTCAGTCCCAAAAGCTCCATTTAGAGTTCTCC
AGGCTTTGGTGGGATTTCAGGTATTGTCTACAAAAAAACAAACAAACAAA
AACAAAACAAAAAAACAAAATAAAACAACAAACAACAAAAACAACACACA
CACCAAAAAACAAACAAAAAAGCCCCCCCCCAAAAAAAAACATACCACCA
CATTCTGAGACAACAGTTCAATGTGATCTAAAAAGCTTTAAAAAGAACAA
AAGCCTCGTGCATGCTATTCAGTACCACCCCCTTTTTATGAGGACTCCTG
GTTGAACTGAATTTCTTGCTGTCTGAATAGATCGTCCTGGCAAATCTCAA
GTCCTACAGGATGCACAGGGATAAATCCAACTGACTCACAACTGTAATTT
CAAATGAGAATTCAACATTTGAAAATCCATTCCCACAATATTTGCTCACT
CTCTGCCATGCACCAGGCATAGGAAATAACTATTGGTAGTTAATGTACCC
AAAAGACAAAGTGGCCATCATGTGACGTGCAAAAAGTCATACATGAGCAA
CACACAATTCTACCTTTCAGAAAGGCAGAGGGAAATGGGTGCAGAATGTA
TATGACTGAGTTTGAT
TGGGCGGGCCGCCCATGGTTCAAAGNACATTTANGNGTGACACTAAATAG
AAGGTTTCCACCAGAAAATTCCTATNNCGACTTTCCAAAAGTAGAAGAAA
CAGTTTAGTGGTAGGTTAAGTTCTGTCCACTCTAGNAAGACCTCCCTCTC
TAGCAAAGAAAAGCGGGGGTAGGAGGGTAGGGAGCGAGGTGAAGTGTGTT
TTTGTGTTTGTGNTTTATTATTTATTAGTATGTAATTGTTTATTTAATTT
TATTATTTATAATTAAATATATATTTAAATAATACACCCACCCCCAATCA
TTATTATTCTATATTCACTTCCTCCTATTTATTATTTTCCTTTTCCCCTC
TCCCCCTTTACTCCCAACACACCACAAAAACCAACAACTTTTTTTTTTTT
TTTATTAAGAGCCAAACNACAACAACACCACCCCGCACACAATTATGAAA
ATAGACCTCCTAGANGCGAAGNACCCCCCAAAAAANNAAAAGATAGGGGG
GGGGNGGTGGNGGGGGGGGGGGGGGAAAAAAGNNNNAAAANNCAAAAAAC
CGCGGGGGGGCGGCGGGGCGGACNCCCCACACCTATCCAATATATACAAT
ACACCTTTATTCATTACCATCTCCCCCACCATCTCCTCTACCTACAACAC
CAACCACACAATTACCACACACCCCCCAAACCACATTATCTAACAACATC
ACAACAACTCATATACAATAACATCTTACAACTACTCACATATTACCATA
CAAACTCATATTCTCTCCTATAAACATCTAATTATTGAATATAAATTTTT
TTATTAATCACACTTTTCCTTCCTCATACTTATATATATTTATTTATTAT
GCACACACACGCACCACCCACACACAACACTATATACCATCATAAGCACC
CCAACACAACCCTACCCCCATAAACACCCACAACCCCACAATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_i02.b1 MSMg01no190_i02.b1 CHROMAT_FILE:
MSMg01no190_i02.b1 PHD_FILE: MSMg01no190_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:46 2005
         (320 letters)



>mm_chr10_85295745_85296464
          Length = 720

 Score =  373 bits (193), Expect = e-108
 Identities = 291/341 (85%), Gaps = 44/341 (12%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttggcacagctgttatttttaagtttctactgctgtgaaacatgaggttcgtgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 334 gaattcttggcacagctgttatttttaagtttctactgctgtgaaacatgaggtttgtgg 275

                                                                       
Query: 65  cgtctctctttcagtcccaaaagctccatttagagttctccaggctttggtgggatttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 274 cgtctctctttcagtcccaaaagctccatttagagttctccaggctttggtggaatttca 215

                                                                       
Query: 125 ggtattgtctacaaaaaaacaaacaaacaaaaacaaaa-caaaaaaacaaaataaaacaa 183
           ||||||||||||||||||| |||  |||||||| |||| ||||||||  ||| |||| ||
Sbjct: 214 ggtattgtctacaaaaaaa-aaa--aacaaaaaaaaaaacaaaaaaa--aaacaaaa-aa 161

                                                                       
Query: 184 c---aaac---aacaaaaaca-acacacacac----caaaaaacaaacaaa----aaagc 228
           |   ||||   |||||||||| ||||||||||    |||||||||||||||    ||| |
Sbjct: 160 cccaaaaccaaaacaaaaacacacacacacacaaaacaaaaaacaaacaaacaaaaaaac 101

                                                                       
Query: 229 c---cc---cc---cc-----caaaa-----aaaaac-ataccaccacattctgagacaa 268
           |   ||   ||   ||     |||||     |||||| ||||||||||||||| ||||||
Sbjct: 100 caaaccaaaccaaaccaaaaacaaaagccaaaaaaaccataccaccacattctcagacaa 41

                                                    
Query: 269 cagttcaatgtgatctaaaaagcttta-aaaagaacaaaag 308
           ||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 40  cagttcaatgtgatctaaaaagctttagaaaa-aacaaaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)