BAC Information

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BAC

Clone NameMSMg01-191B09
Chromosome10 (Build37)
Map Location 73,211,736 - 73,212,016
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432471, LOC544705, LOC100039981, LOC623191
Downstream genePcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191B09.T7 (MSMg01no191_b09.b1)MSMg01-191B09.TJ (MSMg01no191_b09.g1)
ACCAG381222AG381223
length775728
length of high quality
(start - end)
311 (105 - 415)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no191_b09.b1 PHD_FILE: MSMg01no191_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:34 2005CHROMAT_FILE: MSMg01no191_b09.g1 PHD_FILE: MSMg01no191_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTTCCCCCCCCCTCTTCNTCTGTCTCATTCCTTCTTATTCATTATT
NNNNGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGTATTCACACGATATGTCCCCTCTTAAGTGGATATTAGTCCA
AAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAACGCATGAAAC
TCAAGAAGAATGAAGACCAAAGTATGGACACTGTGCCCCTTTTTAGAATT
GGGAACAAAACACCCATGGAAGGAGTTACAGAGCCAAAGTTTGGACCTGT
GACGAAAGGATGGACCATCTAGAGACTGCCATATCCAGGGATCCATCCCA
TCATCAGCTTCCAAACACTGACACCATTATATACACTAGCAAGATTTTGC
TGAAAGAACCCAGATATATTTGTCTCTCCGCCCCACCCCGCCGGTGCCTA
GCATACACAGAAGTGGATGCTCACAGCCAGCTATAGAATGGATTACAGGG
CTTCCCATTGGAGGAGCTATAGAAAGTACCCAAGGATCTAAAGGCATCTG
CAACCCTATAGGTGAAACAACATTATGAACTACCCAGTACCCCTGAGCTC
TTGACTCTAGCTGCATATGTCTTCACAAGATGCTCCAGCCCGCCCCTCAC
TGCGAAAGAGAGGTCCACTGGACCATGTCGTATTTTATCTCTTCCCAGCT
CACGCGTACCTCCATCCGCCTCAATTCCACGCTAACGCCTGCCTTGTGTT
AGTTCTCTTTTCATCCCCCCTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTGTTACACATTCTGGCACCA
GAATGCCCTTGATACCCAAACCAAGGACACAACCAAAAGAGAAAACTGCT
GCCTAATGAGTCAGATCAGCAAGGTTCATGGATCTATTAAAAAAGAACCA
GAAACCCAAATCCAAGAGCACATTTCAGAGCAACTGCTCTGTTCAGCCCA
CAGAGTTGGTTCACTGTTCACATATCAGTAAACATGACAAAGCAGGGCAA
AAGAGTGCATTTGAAAACAGATGGTCTCTCTACAGAGGGAGACAAGTCTT
ATGATAATTTTTTTTCTCCCCCCCCCCACCTAAAGACACTGGCTAGCCAT
GCTGGGCATGAAAGGAACAAACGAAAAAAATAAAAGCTGCATTTGCGAAG
CCAAGATTGATGACAATGAGAAGCTGGCAAGGCAAGAAAGAAAACAGGAG
CATGGATTTCCCCTGCTTATTCACAATGCTGGAAATTTTACCCAGGATTC
CCAAAAATGAGAAAGAAATGATGTTCAGTTAGAAAAGAGGAAATCAAACT
AGACAGTTTCCACGTGGCATGACCTTGTATGTGGAAAACCCCAAGAATTC
TACCAAAATCTTAATAAACTCAGAAGACAACACTGATTACAGGCATCAGA
AGTACAGTTGCACAATACCTGTGAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_b09.g1 MSMg01no191_b09.g1 CHROMAT_FILE:
MSMg01no191_b09.g1 PHD_FILE: MSMg01no191_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:34 2005
         (282 letters)



>mm_chr10_73211536_73212217
          Length = 682

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctgttacacattctggcaccagaatgcccttgatacccaaaccaaggacacaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctgttacacattctggcaccagaatgcccttgatacccaaaccaaggacacaaccaa 260

                                                                       
Query: 61  aagagaaaactgctgcctaatgagtcagatcagcaaggttcatggatctattaaaaaaga 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 aagagaaaactgctgcctaatgagtcagatgagcaaggttcatggatctattaaaaaaga 320

                                                                       
Query: 121 accagaaacccaaatccaagagcacatttcagagcaactgctctgttcagcccacagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accagaaacccaaatccaagagcacatttcagagcaactgctctgttcagcccacagagt 380

                                                                       
Query: 181 tggttcactgttcacatatcagtaaacatgacaaagcagggcaaaagagtgcatttgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggttcactgttcacatatcagtaaacatgacaaagcagggcaaaagagtgcatttgaaa 440

                                                    
Query: 241 acagatggtctctctacagagggagacaagtcttatgataa 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagatggtctctctacagagggagacaagtcttatgataa 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)