BAC Information

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BAC

Clone NameMSMg01-191C14
Chromosome10 (Build37)
Map Location 96,919,245 - 96,919,517
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667380, Btg1, LOC628256, 4930556N09Rik, EG667407
Downstream geneDcn, Lum, Kera, Epyc, 4921510H08Rik, EG667438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191C14.T7 (MSMg01no191_c14.b1)MSMg01-191C14.TJ (MSMg01no191_c14.g1)
ACCAG381271AG381272
length802770
length of high quality
(start - end)
280 (36 - 315)266 (77 - 342)
definitionCHROMAT_FILE: MSMg01no191_c14.b1 PHD_FILE: MSMg01no191_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:40 2005CHROMAT_FILE: MSMg01no191_c14.g1 PHD_FILE: MSMg01no191_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGAGGAATACCGAATGGCAAAGAAGCACCTGAAAAAAATGTTCAACATCC
TTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCAC
ACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGC
AAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAG
CTTATACAACCACTCTGGAAATCATTCTGGTGGTTCCTCAGAAAATTGGA
CATAGTACTACCGGAGTCGAACCTTGTTTCTCTTTCGTAAACCAACNTTT
TTAATGGCTTCCAAAAGCAAACCCCCCTTATTTTTTTTTTTATTTTTATT
ACATTTTTTTTTTCCACAAAAAAAAAAAAATAAACCTCTCGGGTGGGGGG
GTGCTCCAATTAAATAAGAAATCACTACATAAACCCCCCCTCACTCTCTT
TCTATTATTGATACACTTTCCAATACCCTTTTAAAAAACCATCCACTCAC
TCCTTCTTATACCCCCCCATCNTCTTATCGCGGCCCCTCCGTAATTGTAC
TCCCCCACCATCTCTTAGTAACTTTTTCCCCCCCTTCTATTTGCGGCTCC
CCTTATTACTCTCATCTATTTGCAGTAGTAGTGTCGCTTATCCTTCCACT
CCCTCTTTCTTTTTCTCTCCCAAGAGTGGTGNTGGNGCTGCTAAACATAT
TTATCCCCCTCTCACAACGTAATTCCTTCTCGCTTTCTTCATCTTAGCGT
GG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGAAATGAGACAATTTCAGCA
ATAATATGAAACTATTCTAGACAAGAGAGAATCACCCTCATTGCTAACAT
CCGGGCTATAAAGGTTGAATCAAAGGCTTAAAAGGCCCAGCCGGTGGGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCAGCCGGAGAATGGCATCAA
CGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCTATGCCCCAGTGTAAAG
GAATGCCAGGGTGGGGAAATGGAAGTGGGTGGGAAGGTGGGGGAACACCC
TCATAAAGGAATTTTTTTTTTCCCCCCCCCCCCCCCCAATGNATTAGTAG
TGAAATATTATATTAAAAAAGTCTATAAAAAAAAAAAAAAAAAATACGTT
CGGGGGGGGGGGGATTTTTTTCTCTCTTCTTCCCTTCTCCTTTCATATTT
TATCCACTTTTCTTACCCTCTCTTTTACCTTTAATCCCTAATTTTCCCCC
CGCCTTTTTCATCCACCTTCATAAACTCAACAAATATTCACCGACGACCG
TTAAAATATTACGAAATATATAATTTACCCTCGTTATCATCTCTATCCGC
ATTAAAAACCACACCTTAAGACTACGACGTAATAATCTCCACAATTCTCT
ATCCTTTTTCTACCATTGCATGCCAGATACATACTTAAACATCCTAAATA
CAACCACATCCCTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_c14.g1 MSMg01no191_c14.g1 CHROMAT_FILE:
MSMg01no191_c14.g1 PHD_FILE: MSMg01no191_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:40 2005
         (266 letters)



>mm_chr10_96919045_96919712
          Length = 668

 Score =  462 bits (239), Expect = e-135
 Identities = 262/273 (95%), Gaps = 7/273 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggaaatgagacaatttcagcaataatatgaaactattctagacaagagagaatcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggaaatgagacaatttcagcaataatatgaaactattctagacaagagagaatcacc 260

                                                                       
Query: 61  ctcattgctaacatccgggctataaaggttgaat--caaaggcttaaaaggcccagccgg 118
           |||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 261 ctcagtgctaacatccgggctataaaggttgaatatcaaaggcttaaaaggcccagccgg 320

                                                                       
Query: 119 tggg-----aaaaaaaaaaaaaaaaaaaaaaaaaaaaggcccagccggagaatggcatca 173
           ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggcccagccggagaatggcatca 380

                                                                       
Query: 174 acgggaggagaggcccttggtcctgtgaaggctctatgccccagtgtaaaggaatgccag 233
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 acgggaggagaggcccttggtcctgtgaaggctctatgccccagtgtagaggaatgccag 440

                                            
Query: 234 ggtggggaaatggaagtgggtgggaaggtgggg 266
           || |||||| |||||||||||||||||||||||
Sbjct: 441 ggcggggaagtggaagtgggtgggaaggtgggg 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 668
Length adjustment: 9
Effective length of query: 257
Effective length of database: 659
Effective search space:   169363
Effective search space used:   169363
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)