BAC Information

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BAC

Clone NameMSMg01-191E23
Chromosome10 (Build37)
Map Location 51,483,191 - 51,483,470
singlet/doubletsinglet
Overlap genenone
Upstream geneAscc3, Sim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
Downstream geneVgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191E23.T7 (MSMg01no191_e23.b1)MSMg01-191E23.TJ (MSMg01no191_e23.g1)
ACCAG381375AG381376
length703704
length of high quality
(start - end)
316 (36 - 351)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no191_e23.b1 PHD_FILE: MSMg01no191_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:52 2005CHROMAT_FILE: MSMg01no191_e23.g1 PHD_FILE: MSMg01no191_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATTC
TACTAACCCTTTCATGAATAATATACTACAACCCACCTATTTTTTAGGCC
ATTGTGTATTCCTGTGTTTGGGTGTGACTCGACTATTGTCCTAAGTAATT
ACTATGTAAACTAGCCCTGAGCTTTCTAGCTCTATTCAAGTAAATTGTAA
TGCCTGATTATTTTCACTGTCTCTACTAGAAGTAAATTTGAATGTTACTG
AATAGGTAACATTCTTACTGAATTCCAAGCTCAGGGTCCTCTCAAGGATT
GCCTAGGACATCGGAACATTGATGAAGGCTTAGCTATATGTCAAAGTCTA
TCTTTTTTTCCCCCCCCCACCCCACAATACTGAAAGATAGCACACGGATC
CATACACCACACTAAAGAAAAAACAGGTTTTGAGGATGTGGGCTATGCGA
ATGCCAAGGTTCCAGAACGCTATGTTTCCTTGAAACTCTTTGCCTCAAAA
AGGCTTACAGGTTTCAAAACCAGTCATGCAAGTCAATACTGGAAAGCATG
TAACACTGCCAGAAATAAGATTTTTCTTCCACAAAAAACGATGTCACAAC
AAAACTATTATCCCTCAGAAAATATATACTTTAACGCCACACAATAAATG
ACAAACTAGAATATGTAAAACCCCGAATTAGAAAAAGAAAAAACCAATAA
CAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGGAGCCATTTCCATCCCATT
TAATATCTGTTTTTTAAAACTAGTAATTTGGACACATAAAACTTGCTTGG
ATTTAAAAAAAATGAAAATTTATATATCTATCTTGCCATAAATTCCCTGT
CTTTCTTGCTCTTGCCTTCCTTTCTCCCACTGTAGTAACCAGGGCATAAG
GGCACCTGGAACATGTGGCTTTCTATTTGATCAAAGCTAATGATCAACCA
GGCTCAAAGGAAGATAGGTCAGCTGTCCTACTTCAGCTGCCGGATAGAAT
CTTTGTTTGTTCTCCCCCCCCCCCCCCCCATCTGTGCTATCACCACAAGG
GGAAAAACTCCAGAAGTAAAGAAAAAAGAGAACTAAGAACAGGACTTTTA
AAATGGTTTCAGATATATATTGATAGGAGTTGTCATTCTATGATTAGAAA
TCTGTCCTTTGTTCATTTCTGTGACTCAATAGAGCCAGAGAATGTTCACT
TCTGTTTGTGTGCTAACTTTATTTATCTATTATCTTCTTTTCCTACACCA
TCATTTTGAAGCTATAATTTTTTCTTTTGTTTACATTTTAAGCTTTATGC
CGAGACATTAAAATGTGCTTATGTACTCTACCCTATATATATATATATAT
ATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_e23.g1 MSMg01no191_e23.g1 CHROMAT_FILE:
MSMg01no191_e23.g1 PHD_FILE: MSMg01no191_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:52 2005
         (282 letters)



>mm_chr10_51482991_51483672
          Length = 682

 Score =  518 bits (268), Expect = e-151
 Identities = 277/280 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgggagccatttccatcccatttaatatctgttttttaaaactagtaatttggacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttgggagccatttccatcccatttaatatctgttttttaaaactagtaatttggacaca 421

                                                                       
Query: 61  taaaacttgcttggatttaaaaaaaatgaaaatttatatatctatcttgccataaattcc 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 420 taaaacttgcttggatttaagaaaaatgaaaatttatatatctatcttgccataaattcc 361

                                                                       
Query: 121 ctgtctttcttgctcttgccttcctttctcccactgtagtaaccagggcataagggcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctgtctttcttgctcttgccttcctttctcccactgtagtaaccagggcataagggcacc 301

                                                                       
Query: 181 tggaacatgtggctttctatttgatcaaagctaatgatcaaccaggctcaaaggaagata 240
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 300 tggaacatgtggccttctatttgatcaaagctaatgatcaaccaggctcagaggaagata 241

                                                   
Query: 241 ggtcagctgtcctacttcagctgccggatagaatctttgt 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ggtcagctgtcctacttcagctgccggatagaatctttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)