BAC Information

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BAC

Clone NameMSMg01-191L18
Chromosome10 (Build37)
Map Location 103,485,133 - 103,485,405
singlet/doubletsinglet
Overlap genenone
Upstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191L18.T7 (MSMg01no191_l18.b1)MSMg01-191L18.TJ (MSMg01no191_l18.g1)
ACCAG381644AG381645
length736743
length of high quality
(start - end)
315 (46 - 360)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no191_l18.b1 PHD_FILE: MSMg01no191_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:27 2005CHROMAT_FILE: MSMg01no191_l18.g1 PHD_FILE: MSMg01no191_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGCTGGTGATGAACCATATTTTCTGTATTCATTTATCAGTTGA
GGGAAATCTGTGTTGCTTCCAGTTTCTTGCTATTATGAATAAGGCTGCTG
GCTGCTATGAAAATGATTGCGCACATGAAATGGCTCCCATCTAAAAAGAA
ATGAAGGGACAAAAATGTAGAAAATGGAGCAGAGACTGAAGGAAGGGCTG
ACCGCGACCAATAATCAGCCCAATTTAGGATCCATCCCATGGCTGGGCAC
TAATCACTGACTATTGCTAATGCTATGCCTTGCTTGCACACAGGAGCACA
GCATGGTTGTTCTCTGAGACCCTCGACCCAACAGCTGACTGAGACTGATG
CAAATACCCACAGCCAAGCAATGAAAAGAGATTGGGAACTCCTAAAGAAA
AGTTAGGAGACAGATTGAAGAAACTGAGGGGGGTGGCAGGGGGACCAATG
GTGTCAGCTGGGTTGGACCCAGGGGAGCTCCCAGAGACTGGACTATGTAT
GAGCCAAGGATCATACACAGGCTGGTCCAGGGACTTTGGAACATATGTGT
CAGGGGGTTGGTTGCCTTGATTGGCCTCAGTGGGAAAGGTAGTACTGAAT
CCAATGAAGACTTGGTGACCCGGGATAGGAGGATACCAGGGAGTGGTGAT
ATCTCAGAGGCAAAAGGTAGCAGGGACGGTGGTAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTTACCAGGAGACCCTACCTA
AGAAAGCAAGGTGAATGACTCAAAATAAAAGAAACGTTAGTTTTTGCACA
CACACACACACACACACACACACACACACACACACACACACACACCATGG
TAGATAAAAAGAGCTTTTAAAACTTGTGCATGCATTTCTTCTCTACAAAC
AACGATCCAATCTCATCTGTGTCATCATTATCACCCTTCATAAAGCATAT
ACTATCACCACAGCTAATAACCTCTCAGGTGAATCAGTATCAACATTTCA
TGTGTTCATACTTAGATACTGCGCGCCACGTGGAATAATTACAAAGCCTG
AAGTAAGTGTGGAAAGAGAAAAGAAAATTTATTGGTAACCATTTTCCTAT
CTTCAACGTTTCAACTTGTTTCTTCTCGGTATGATGTGTAGGTTTATATT
TTTAAAGAAAAGTGTTCAGATATATCAATATTAAGACGTTCATTATATTT
CAAAAACACAAGGATGAGCTTAAAATGCATAGATTCTATATATAAAATGT
ACATCACACAGCTTTTTGTCTTTCTAGGTAGATAATCTTGGCTTTGAACC
ATAGAACAGCAAACAGGGTATTTCCTATTTGTTTTCCCTGTTCCACTGTC
ACCAACTTAATGTTTCTTCCTTGAACAGCAAACCGGCTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_l18.g1 MSMg01no191_l18.g1 CHROMAT_FILE:
MSMg01no191_l18.g1 PHD_FILE: MSMg01no191_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:27 2005
         (288 letters)



>mm_chr10_103484814_103485501
          Length = 688

 Score =  462 bits (239), Expect = e-135
 Identities = 268/285 (94%), Gaps = 12/285 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggttaccaggagaccctacctaagaaagcaaggtgaatgactcaaaataaaagaaacg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 592 caggttaccaggagaacctacctaagaaagcaaggtgaatgactcaaaataaaagaaaca 533

                                                                       
Query: 61  ttagtttttgcacacacacacacacacacacacacacacacacacacacacacacacacc 120
           ||||||||||            ||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttagtttttg------------cacacacacacacacacacacacacacacacacacacc 485

                                                                       
Query: 121 atggtagataaaaagagcttttaaaacttgtgcatgcatttcttctctacaaacaacgat 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atggtaggtaaaaagagcttttaaaacttgtgcatgcatttcttctctacaaacaacgat 425

                                                                       
Query: 181 ccaatctcatctgtgtcatcattatcacccttcataaagcatatactatcaccacagcta 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 424 ccactctcatctgtgtcatcattatcacccttcataaagcatatactatcaccacagctg 365

                                                        
Query: 241 ataacctctcaggtgaatcagtatcaacatttcatgtgttcatac 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ataacctctcaggtgaatcagtatcaacatttcatgtgttcatac 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)