BAC Information

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BAC

Clone NameMSMg01-191O18
Chromosome10 (Build37)
Map Location 120,216,700 - 120,216,980
singlet/doubletsinglet
Overlap genenone
Upstream geneGrip1, Helb, Irak3, Tmbim4, 1190005P17Rik, Hmga2, LOC100042902
Downstream geneMsrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500, Tbk1, Xpot, D930020B18Rik, BC048403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191O18.T7 (MSMg01no191_o18.b1)MSMg01-191O18.TJ (MSMg01no191_o18.g1)
ACCAG381768AG381769
length760714
length of high quality
(start - end)
98 (44 - 141)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no191_o18.b1 PHD_FILE: MSMg01no191_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:42 2005CHROMAT_FILE: MSMg01no191_o18.g1 PHD_FILE: MSMg01no191_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGAGACCACCCGCGGA
ACTCTTTAAATTTTTAAAAAATATTTTTATATATGTGTATGCCCCACCCC
CACCCCCGGAAAGTATGTTCCGTGTGTGTGTGTGTGTGTGTGTATGTCTG
AATAGAGCTGCATACTAANTAAAAATAATATACACCCCTAATCCCACCAA
TCCAACCACCCGAAACACTAACACCTCTAACCCCCACCCCCCACTGATCC
ACACTAACACACACCAATTAAACCACACTCACCACACACTCCCCAACCCA
AAAACCCACCCAACCATTTACCCAAAAGACAAAAACCACACAAAAATAAA
ATTTTAAGTGACCCCAAAAACAAAAACCCCATGTAATTTTTTTAAAATGT
TTGTTTTTTTTTTGCCAAAAAAAAAAAAAAAAAACCCGTCCCGCACCCCC
CCCCCACCCCCTATCTTATACCACACACCTACCCCACCCCACACCACACA
AACCCAACCACAAAACCTCACCCCATAACAAACACCCCCCAACACACCAT
CACCCCACACCTACCAACACATCCAACCATAACAAAACCCCCCAAACCCA
AAAACCAAATACACCCAAATCTACACAACCCAACCAACACTCACAACCAA
AAAAATAACTCACCCAACTTCCTCTCCCAAAACCACCCCCTTATAACATA
CAATTCCACCCATCTACACCCCCTCTACCCAAACACCCACCACAATAAAC
AAAACAAAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAACCAATGAATAAGGATGCCT
TTGAGACTGCCCCGTGAACAACTTGTAAATTCAAACTTTGTTGGATACTA
GTATTGTCTAAAAGTCACTTTACTACTGAAACATGGGAAATGTTAAAAGT
TTCTATAGATGATGAGATAGATGTACATGTTATATGTGGAAGTTTGAATG
AGAATGGCTCCCAAAGACTCATATATTTGAATGCTTGTTTCTCAGTTGGT
GGACTGTTCAGGAAGGAAGGAATTAGGAGGTATGTCCTTGTTTGAGGAGG
TGTGTTCNGTAGTTGCCCTTTGCGGTCCCAAAAAAGGCCCACACTTGCAC
CTCCACCCATGACTGGCTGCTAGAAAACAGGAGGTAGATATTAACTATTG
GCTCTAGTTGAATGCCTGCCTGCCATCATGCTTTCTGCCATGCTGATCAT
GGACTAAACTTCAGAAAATGTAAGCAAGCCCCCAATTAAATTATTTCTTT
TATAAGATGCATTGGTCTTAGTGTTTCTTCACAGCAATAGAGTAGTAACT
AAGACTTTGTATGTGTGTATATATGTGTGTGAGTGTCATAGAAAGGTCCT
GCATGAAACTGCTGGTCAGTACTTGCGATCCCAGGAATGTCCACTGAAAA
AACGAGTCTCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_o18.g1 MSMg01no191_o18.g1 CHROMAT_FILE:
MSMg01no191_o18.g1 PHD_FILE: MSMg01no191_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:42 2005
         (283 letters)



>mm_chr10_120216500_120217182
          Length = 683

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaccaatgaataaggatgcctttgagactgccccgtgaacaacttgtaaattcaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaccaatgaataaggatgcctttgagactgccccgtgaacaacttgtaaattcaaac 260

                                                                       
Query: 61  tttgttggatactagtattgtctaaaagtcactttactactgaaacatgggaaatgttaa 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgttggatactagtattgtccaaaagtcactttactactgaaacatgggaaatgttaa 320

                                                                       
Query: 121 aagtttctatagatgatgagatagatgtacatgttatatgtggaagtttgaatgagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtttctatagatgatgagatagatgtacatgttatatgtggaagtttgaatgagaatg 380

                                                                       
Query: 181 gctcccaaagactcatatatttgaatgcttgtttctcagttggtggactgttcaggaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcccaaagactcatatatttgaatgcttgtttctcagttggtggactgttcaggaagg 440

                                                    
Query: 241 aaggaattaggaggtatgtccttgtttgaggaggtgtgttc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggaattaggaggtatgtccttgtttgaggaggtgtgttc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)