BAC Information

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BAC

Clone NameMSMg01-192A04
Chromosome10 (Build37)
Map Location 126,693,804 - 126,694,214
singlet/doubletsinglet
Overlap geneKif5a
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c
Downstream geneDctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192A04.T7 (MSMg01no192_a04.b1)MSMg01-192A04.TJ (MSMg01no192_a04.g1)
ACCAG381832AG381833
length1,2121,228
length of high quality
(start - end)		425 (28 - 452)382 (69 - 450)
definitionCHROMAT_FILE: MSMg01no192_a04.b1 PHD_FILE: MSMg01no192_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:49 2005CHROMAT_FILE: MSMg01no192_a04.g1 PHD_FILE: MSMg01no192_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGCACTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCCA
GAGATTCACCTGTCTCTGCTCCCAGCGTGCTGAGATTAAAGGTGTCGTGT
GTTAAAAAGGATCTTTCTTGGAAGGTAAGGAAATTAACACAGAGCTGGTA
AACGCCATTTGTTTGCTTCTGACAGGACCTTGCTAGGTAGCCCAGGCTAG
CCTGCGACTCACAGTCCTCATTCCTGCCTCTGGGCTTCCAAGTGCTGTAA
TCAGCACCACTGCAGCCACACCCTGCTAGAAGGATGCCTTCTGATGGTCC
ACTGCTGCCGCTGCCCCGGGTTCTCCGGAAGTTTCAAATCACCACCCAGA
TCTAGAATGTCCCCAAGGACAACACCCGTCCAAATCCCCCACACCAAGCA
CAGTCCCTGGAACTCAGCGACTCCCTGTGTTTGCTGAATAAACAGATATC
TTTTACCCCCCCCTGGGTACAGGCCTAGAGGTTTGGATGAAGCCATTCAT
AAGAGGACAGAGTGTTTAGCACTTCCAAATTAGGCGTGTGCAGAGACAAG
ATGTATAAAAACCATTTTATTTACTTTTGTTGTATTCGTATGAGTGTCTC
TTTACATGTATATATGTATGTGTGCGTACCATCTGCATGCCCAGTGTCTG
TGGAGATCCATAAAAAGGTTAGCTGATTCCCTGTACCCGGAGTTACAGAC
AGTTGTGAGTTTCCTTTGAAGCTTCTGCTTACTTGAATCCAGTCCTCTGC
AATATCTGCCTTTGTCCTTAATCTCTGATCTTTCTCCTCATCAATTCCTT
CCCCACCTTCTGTCTGTTTGTCTGTTCTGCTATCTCTTACTCCTCTCTTA
TTTCTTCTTTTTATCTACTTTCTTTCTCTCCTTTTTTTCTTCATTTTTCT
TTTATTATTCTCTTTAAATCTCTCTCTTTTTATCTTTTTTTTTTTTTTAT
TATCTATCTTTCCTTTTCTTTTCCTTATCTTCTTTTTCTCTCCTTTTTTC
TTCTTTTTTTCTCTCCTTATTCTTTTTTCCATTTTACTTTTCCTTTTTCC
TTACTTTTCCCCTATTCTCTTTTTTTCCTTTTTTCTTCCTTTTACTTATC
TTTTCTCATTTTCCTTCCTACCTTCCTTCCTCTTCTTTACTCTTTTCTCT
CTGTTTCCATCTATTTTTTTTCTTTCCTTCTTGTTTTACTTCTCTATTTT
TTTAATTCTCCT

NNCCCGTGACGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCCTGCCTCTGCCTTCCAGTGCTGGGATTAA
AGGCATGTGCCTGGCAATTCTTATAAAGGAAAACACTTCTTTGGGGGTGG
CTTACAGATTCAGAGGTTTAGTCCATTATACTCATGGTAAGAAGTATGGC
AGCATACAGGCAGACATGATGCTGGAGAAGGAGCTGAGAGTTCTGTCTTG
ACCCACAGGCAGCAGGAGCCTATCCCATTGTGCATAGCTTCAGCATATAA
GACTCTAAAGCCCACCCCCAAAATGACACACTTCCTCCAACAAGGCCACA
TCTACTCCAACAAGGCTGAACTTCCCAATAGTGCCACTTCTATGGGCCAA
GCATTCAAACACATGAGGCTATGGGGACATCCCTCTTCAAACCATCACTT
TTTTTTTCTCCCCATGTAGCCCTGGCTGACCTGAAACTAACAAGAGAGAC
CAGGCTGGACTTGAACTTAGAGAGCCAGCCACTCATAGCCAACAAGAAAT
TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATGGNCCT
GACGTTTATTTACTTCACATATGAGTACACTTATAGCTGTCTTCAGACAC
ACCAGAAGAGGGCATCAGATCCCATCACAGATGGTTGTGAGCCACCATGT
GGTTGCTGGAAACTGAACTCAGGACCTCTGGAAGAGCAGTCTGTGCTCCC
AGCCAAGGAGTCATCTCTCCAGCCCCTGAGGTTATTTTTTTTAACAGCCT
TTTGTCCTTGGCAAGTGGTGCTTGCCTTTATTCTGGTCACTGGGGAGCCA
GAAGGCCTGTAAATTTCGGTTTCCTGCTAATCCGGTCTTTCTATTGTTTT
TTTTTACCTCTCTGGCTTTTTAAAAAAATCCTCTTGTTGTACTGCTCTTT
TCTTGATTCTTTTCTTCTAATTCTCAATCTTTCTTATTTTTTTTTTTTCT
CCTCTCTATCTTCTTTGTTCCCCCTTTCTCCTCTCCATTTATTATTTTCT
TTCTTCTTCCTCTCTCTTTCTTTCATTTACTCTTGTCCTTCTTTTCCTTT
TATCACCTTTATCTTTTATCCTATCTCATATATTTTNCTTCCTTTCTATC
TTTTTTATTTATTATCTTTCTTCTCTTTTTACTTGTATCTCTCTCTATTA
CCTCATTCATCTATCTTTCCTCTTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_a04.b1 MSMg01no192_a04.b1 CHROMAT_FILE:
MSMg01no192_a04.b1 PHD_FILE: MSMg01no192_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:49 2005
         (425 letters)



>mm_chr10_126693591_126694416
          Length = 826

 Score =  756 bits (391), Expect = 0.0
 Identities = 406/411 (98%), Gaps = 2/411 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaattc-cagagattcacctgtctctgctcccagcgtgctgagattaaaggtgtcgtgt 73
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ggaattcacagagattcacctgtctctgctcccagcgtgctgagattaaaggtgtcgtgt 273

                                                                       
Query: 74  gttaaaaaggatctttcttggaaggtaaggaaattaacacagagctggtaaacgccattt 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gttaaaaaggatctttcttggaaggtaaggaaattaacacagagctggtaaacgccattt 333

                                                                       
Query: 134 gtttgcttctgacaggaccttgctaggtagcccaggctagcctgcgactcacagtcctca 193
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gtttgcttcggacaggaccttgctaggtagcccaggctagcctgcgactcacagtcctca 393

                                                                       
Query: 194 ttcctgcctctgggcttccaagtgctgtaatcagcaccactgcagccacaccctgctaga 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttcctgcctctgggcttccaagtgctgtaatcagcaccactgcagccacaccctgctaga 453

                                                                       
Query: 254 aggatgccttctgatggtccactgctgccgctgccccgggttctccggaagtttcaaatc 313
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 454 aggatgccttctgatggtccactgctgccgctgccccgggttctcccgaagtttcaaatc 513

                                                                       
Query: 314 accacccagatctagaatgtccccaaggacaacacccgtccaaatccccca-caccaagc 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 514 accacccagatctagaatgtccccaaggacaacacccgtccaaatccccccgcaccaagc 573

                                                              
Query: 373 acagtccctggaactcagcgactccctgtgtttgctgaataaacagatatc 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 acagtccctggaactcagcgactccctgtgtttgctgaataaacagatatc 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 826
Length adjustment: 9
Effective length of query: 416
Effective length of database: 817
Effective search space:   339872
Effective search space used:   339872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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