BAC Information

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BAC

Clone NameMSMg01-193M08
Chromosome10 (Build37)
Map Location 44,833,748 - 44,834,102
singlet/doubletsinglet
Overlap genePrep
Upstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974
Downstream genePopdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193M08.T7 (MSMg01no193_m08.b1)MSMg01-193M08.TJ (MSMg01no193_m08.g1)
ACCAG382939AG382940
length764726
length of high quality
(start - end)
360 (46 - 405)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no193_m08.b1 PHD_FILE: MSMg01no193_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:23 2005CHROMAT_FILE: MSMg01no193_m08.g1 PHD_FILE: MSMg01no193_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAAAGTCTCCGAGTTCTTTCATGTATACATGTCCAAGACAGTCA
CTGAGCCTGTGTGTCAGGTATGTCCTGAAGCAGGTGTTGTCAGGTGAGCT
TTTACTCATTAAAGGAGCTCAACAGAGAGCCATTTACAGGATGACAGCAA
ATGCTGTTAACAGTTTTATTGGTGACCACTGTATACCAGATCTTAGGAAT
AAAGGACTGGAGAGTGCTGTAACTCCACTCAGTACAGCCTTTATTTGTGT
CTTTAAAATACCTGCAAGCTATGTTGTGAAGTAGCAAGCAAACCCGTAAG
CACTTAGCTCTAGTTTGAGAAGAACATGGAGTGTGAGCCTGGTAGAAGTG
GCTTGTCATTGGAGACCCCCCCACCCAGAGGAACCGCCTGTGTTTTGCCT
AGCACCTCAGCATAGGACGCAAGATTTTGAATGTGTAAAGGTGACAAAGG
ACTGTTTTATGGCGTGGTAACTTAACTCGTATCCGTTTGTTACTTCTGTT
CCAATTTCCATCTCCCCTCTTCTTCGCACCTTTTTACTATTGTTTTTCAT
CTTTTTTTCTTTCTGTACATTCTCCCTTCTCTTTCTTCTTCCTTTTTTCC
CTACTTCCCTGCTCCAATTCCCTCCCCGCTTTATCCCTTCACCTTTTTAT
TATTACCCTTCTCCCCNCTACCCTTCATTTTCCTCCTTTACCCACACCTT
TCTTTCCTCTACCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAGTGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAAAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGGAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTTTTATATATCCACGAAGATGCCCCAACTGGTA
AGAAGGACACATGCTCCACTACCCCCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT
AAGTGGATATTAGCCCATAACCTACGATACCCAAGATATAAGATACCATT
TCCTAACTACTGATATTCAAGCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_m08.b1 MSMg01no193_m08.b1 CHROMAT_FILE:
MSMg01no193_m08.b1 PHD_FILE: MSMg01no193_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:23 2005
         (360 letters)



>mm_chr10_44833544_44834304
          Length = 761

 Score =  603 bits (312), Expect = e-177
 Identities = 345/356 (96%), Gaps = 3/356 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaaagtc-tccgagttctttcatgtatacatgt-ccaagacagtcactgagcc 62
           |||||||||| ||| |  |||||||||||||||||||| | |||||||||||||||||||
Sbjct: 205 gaattcctaacgtcat-agagttctttcatgtatacattttccaagacagtcactgagcc 263

                                                                       
Query: 63  tgtgtgtcaggtatgtcctgaagcaggtgttgtcaggtgagcttttactcattaaaggag 122
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtgtgtcaggcacgtcctgaagcaggtgttgtcaggtgagcttttactcattaaaggag 323

                                                                       
Query: 123 ctcaacagagagccatttacaggatgacagcaaatgctgttaacagttttattggtgacc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcaacagagagccatttacaggatgacagcaaatgctgttaacagttttattggtgacc 383

                                                                       
Query: 183 actgtataccagatcttaggaataaaggactggagagtgctgtaactccactcagtacag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actgtataccagatcttaggaataaaggactggagagtgctgtaactccactcagtacag 443

                                                                       
Query: 243 cctttatttgtgtctttaaaatacctgcaagctatgttgtgaagtagcaagcaaacccgt 302
           ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 444 cctttatttgtatctttaaaatccctgcaagctatgctgtgaagtagcaagcaaacccgt 503

                                                                   
Query: 303 aagcacttagctctagtttgagaagaacatggagtgtgagcctggtagaagtggct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagcacttagctctagtttgagaagaacatggagtgtgagcctggtagaagtggct 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 761
Length adjustment: 9
Effective length of query: 351
Effective length of database: 752
Effective search space:   263952
Effective search space used:   263952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)