BAC Information

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BAC

Clone NameMSMg01-194O11
Chromosome10 (Build37)
Map Location 125,569,720 - 125,570,356
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994, Lrig3
Downstream geneLOC100043547, LOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194O11.T7 (MSMg01no194_o11.b1)MSMg01-194O11.TJ (MSMg01no194_o11.g1)
ACCAG383646AG383647
length739735
length of high quality
(start - end)
691 (46 - 736)636 (77 - 712)
definitionCHROMAT_FILE: MSMg01no194_o11.b1 PHD_FILE: MSMg01no194_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:56 2005CHROMAT_FILE: MSMg01no194_o11.g1 PHD_FILE: MSMg01no194_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAAATAGTGAGAAGCTGGAAGCAATCCCAGTAAAA
TCAGTGACTAGACAAGGCTGCCCACTTTCTCGCAACCTATTCAACATTGT
ACTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAGCCT
GATAAACAGCTTCAATGAAGTAGCTGGATATAAAATCAACTCAAACAAGA
AAATGGCCTTTCTGTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGG
GAAAAATCACCCTTGTCAATAGTCACAAATAATATAAAATACCTTGGCGT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAATCTC
TGAAGAAAGAAATTAAAGGAGATCTCAGAAGATGGAAAGATCTTCCATGC
TCATGGATTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGGACTCCCCATCANAATTCCAACTCAATTCTTCA
AAGAATTAGAAAGGGCAATCTGCAAATTCATCTGGAATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCAGATAGAACCATAACCATAT
CCATCCCATGTTCAAATTAGATTTGGTGGGATGTTCAAAGTTGACTTTCC
ACACACTGTTAGGAGAACAGTCAGTGAAGATTGCTGTACTCACTTACCTG
ACTCTGGATTTACTGTCTGGTCCCCAAAGAAGGTCCAGGCATTCCAGTGC
TGCCCATGGGATTTCTACTTGTGGCAACACACTATCCTTTCACACAGGAC
TCCTCTTTTTGTGTAAATCCTATATCCTGGCATTTTGCTCTCCACCAGCC
TGTTCCTATAAGCAAGCTGGTGTGGGGTATACACGTGGTGGTATCTCATT
ACATGTGGCTCAGCCATGCTTTGAAAATCTGCCCCTGCCTGTCGGTCTAT
TATCTTTATCTGAAACTTCAATGCTCCAATATAACAGGGCAGAAAAGGAA
ATTCCCACTTTCAGAGCAGAGCATAGTGTAGGCTGGCCTCCTAAGATCCC
ATCTCTGGTATATCACCTGCCATCTCAGAGGCTGATGCCAGAGCTCTTCT
CAGTATGTCCAAGGTGTCCTGGGAGTCCTGCTTCTCTAGGAAAGCCTCTG
AGAGTGTGTCTTCAGTCTGCAACACAGCCAGCATGCAAGACCAGAGACAT
CGATAACTTGTCCTTATAGTCCCAAAAGATGTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_o11.g1 MSMg01no194_o11.g1 CHROMAT_FILE:
MSMg01no194_o11.g1 PHD_FILE: MSMg01no194_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:56 2005
         (636 letters)



>mm_chr10_125569520_125570556
          Length = 1037

 Score = 1178 bits (609), Expect = 0.0
 Identities = 630/637 (98%), Gaps = 1/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcagatagaaccataaccatatccatcccatgttcaaattagatttggtgggatgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcagatagaaccataaccatatccatcccatgttcaaattagatttggtgggatgttc 260

                                                                       
Query: 61  aaagttgactttccacacactgttaggagaacagtcagtgaagattgctgtactcactta 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagttgactttccacacacagttaggagaacagtcagtgaagattgctgtactcactta 320

                                                                       
Query: 121 cctgactctggatttactgtctggtccccaaagaaggtccaggcattccagtgctgccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 cctgactctggatttactgtctggtccccaaagaaggtccaggcattccagtgctgcccg 380

                                                                       
Query: 181 tgggatttctacttgtggcaacacactatcctttcacacaggactcctctttttgtgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggatttctacttgtggcaacacactatcctttcacacaggactcctctttttgtgtaa 440

                                                                       
Query: 241 atcctatatcctggcattttgctctccaccagcctgttcctataagcaagctggtgtggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcctatatcctggcattttgctctccaccagcctgttcctataagcaagctggtgtggg 500

                                                                       
Query: 301 gtatacacgtggtggtatctcattacatgtggctcagccatgctttgaaaatctgcccct 360
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 501 gtatacacgtggtggtatctcattacatgtggctcagccatcctttgaaaatatgcccct 560

                                                                       
Query: 361 gcctgtcggtctattatctttatctgaaacttcaatgctccaatataacagggcagaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctgtcggtctattatctttatctgaaacttcaatgctccaatataacagggcagaaaa 620

                                                                       
Query: 421 -ggaaattcccactttcagagcagagcatagtgtaggctggcctcctaagatcccatctc 479
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggaaattcccactttcagagcagagcatagtgtaggctggcctcctaagatcccatctc 680

                                                                       
Query: 480 tggtatatcacctgccatctcagaggctgatgccagagctcttctcagtatgtccaaggt 539
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 tggtatattacctgccatctcagaggctgatgtcagagctcttctcagtatgtccaaggt 740

                                                                       
Query: 540 gtcctgggagtcctgcttctctaggaaagcctctgagagtgtgtcttcagtctgcaacac 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtcctgggagtcctgcttctctaggaaagcctctgagagtgtgtcttcagtctgcaacac 800

                                                
Query: 600 agccagcatgcaagaccagagacatcgataacttgtc 636
           |||||||||||||||||||||||||||||||||||||
Sbjct: 801 agccagcatgcaagaccagagacatcgataacttgtc 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1037
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1027
Effective search space:   642902
Effective search space used:   642902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)