Query= MSMg01no195_d07.b1 MSMg01no195_d07.b1 CHROMAT_FILE:
MSMg01no195_d07.b1 PHD_FILE: MSMg01no195_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:21 2005
(679 letters)
>mm_chr10_25135100_25136177
Length = 1078
Score = 1230 bits (636), Expect = 0.0
Identities = 666/676 (98%), Gaps = 1/676 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgtacagaactcgaggtcttgatcagtgagaccatcaggttctgatggaatat 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtacagaact-gaggtcttgatcagtgagaccatcaggttctgatggaatat 262
Query: 64 ctatcccatcctcagagggtgccatctccctcagaggtttcattgttgacatttttgctc 123
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 263 ctatcccatcctcagagggtgccacctccctcagaggtttcgttgttgacatttttgctc 322
Query: 124 ctatgaatttggagaagccctggaattccttttttcaggtctagtgctagaaatgggaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctatgaatttggagaagccctggaattccttttttcaggtctagtgctagaaatgggaag 382
Query: 184 gggaaggatcatagctgtgtctctcctgtccccgtgaagacttgtagctgtcagcggtgc 243
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gggaaggaccatagctgtgtctctcctgtccccgtgaagacttgtagctgtcagcggtgc 442
Query: 244 tgctctcagaaggtttcggactagagcagtcaggaaggatctctacagttcctcgtgctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgctctcagaaggtttcggactagagcagtcaggaaggatctctacagttcctcgtgctg 502
Query: 304 tgctgactcccaaccacagcattatttttgttgctacttcataactgtaattttgctgca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgctgactcccaaccacagcattatttttgttgctacttcataactgtaattttgctgca 562
Query: 364 gttacaaatcttgatgtaaatatttgatatgagacccctgtgaaagggttgctcaactcc 423
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 563 gttacaaatcttgatgtaaatatttgatgtgggacccctgtgaaagggttgctcaactcc 622
Query: 424 caaaacgggtcacagcccacaggttgagaaccactggactagcgcattcctttgtagcag 483
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 caaaatgggtcacagcccacaggttgagaaccactggactagcacattcctttgtagcag 682
Query: 484 agctgagtttatctaataactatgaaggcaaatggtaaactgaactgtattgttcttaga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agctgagtttatctaataactatgaaggcaaatggtaaactgaactgtattgttcttaga 742
Query: 544 aacagtttttttgtcatttgcttcagtccagtttttggactaccatctctataatgtaat 603
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 743 aacagtttttttgtcatttgcttcagtccagtttttggactaccatctccataatgtaat 802
Query: 604 cagacagttttgccttgaagtaacctgtttgtgcagcttccccttcatggcactctgggt 663
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 803 cagacagttttgccttgaagtaacctgtttgtgcagcttccccttcacggcactctgggt 862
Query: 664 cttgaggctgatcttg 679
||||||||||||||||
Sbjct: 863 cttgaggctgatcttg 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1078
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1068
Effective search space: 714492
Effective search space used: 714492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_d07.g1 MSMg01no195_d07.g1 CHROMAT_FILE:
MSMg01no195_d07.g1 PHD_FILE: MSMg01no195_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:21 2005
(650 letters)
>mm_chr10_25191825_25192876
Length = 1052
Score = 934 bits (483), Expect = 0.0
Identities = 543/591 (91%), Gaps = 45/591 (7%)
Strand = Plus / Minus
Query: 105 aatcaaaagacactgtgtcaccgggagatgcaaacatgtgtagtcatgacagatatggct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 aatcaaaagacactgtgtcaccgggagatgcaaacatgtgtagtcatgacagatatggct 993
Query: 165 gttcgcaggcctggagagttggggctgcagggggaaactgtctggctgtagaaaagcaga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 gttcgcaggcctggagagttggggctgcagggggaaactgtctggctgtagaaaagcaga 933
Query: 225 ataggagacaagatgcagctctgcctctaaggc--------------------------- 257
|||||||||||||||||||||||||||||||||
Sbjct: 932 ataggagacaagatgcagctctgcctctaaggccagggtaaggagtaagggctaccaaag 873
Query: 258 -cagt---------------gaactttagcctgcgtgctcaagaaggtggacttccaccc 301
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 acagttctgtactaaagacagaactttagcctgcgtgctcaagaaggtggacttccaccc 813
Query: 302 ttcccactttctccttgaaatgatgctctttgtggttcgcactgtggagaacagcccaag 361
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 812 ttcctactttctccttgaaatgatgctctttgtggttctcactgtggagaacagcccaag 753
Query: 362 caatacgggtgcaacccatgctaac--gagagaatgagcaaactctgactttgcaatctt 419
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 752 caatacgggtgcaacccatgctaacgagagagaatgagcaaactctgactttgcaatctt 693
Query: 420 aaaactggtaaattcctagttgtttgtttaattctgctagtattgatcagaattacttgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aaaactggtaaattcctagttgtttgtttaattctgctagtattgatcagaattacttgt 633
Query: 480 atttgattttctaagtatggcaagcagcagagtactctgcctagagaaatgtatttttat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 atttgattttctaagtatggcaagcagcagagtactctgcctagagaaatgtatttttat 573
Query: 540 ttctatttctccagccaaacaaacttaagcaacaggtatactgatctctgtctcaaaagt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttctatttctccagccaaacaaacttaagcaacaggtatactgatctctgtctcaaaagt 513
Query: 600 cttcatttccaacacagcatttcatactatcagttcaaatctgggtgacaa 650
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 512 cttcatttccaacacagcatttcatactaccagttcaaatctgggtgacaa 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1052
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1042
Effective search space: 666880
Effective search space used: 666880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
