BAC Information

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BAC

Clone NameMSMg01-197B10
Chromosome10 (Build37)
Map Location 93,190,610 - 93,325,727
singlet/doubletdoublet
Overlap geneNtn4, LOC100041907, Usp44, Metap2
Upstream geneGm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, LOC667338
Downstream geneVezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197B10.T7 (MSMg01no197_b10.b1)MSMg01-197B10.TJ (MSMg01no197_b10.g1)
ACCAG384958AG384959
length726888
length of high quality
(start - end)
544 (46 - 589)268 (131 - 398)
definitionCHROMAT_FILE: MSMg01no197_b10.b1 PHD_FILE: MSMg01no197_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:50 2005CHROMAT_FILE: MSMg01no197_b10.g1 PHD_FILE: MSMg01no197_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,190,610 - 93,191,149)(93,325,460 - 93,325,727)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGACAGCCTGGTCTAGAGTGAGTTCCAAGGCAGACAAACACAA
AGAAATCCAGTCCTAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAGAAGA
ATGAGTATAAAATATATGCTAGGAACTCAGAACTGAACCATAACCTCTCC
CCAGCCCACCAATCTCCCTAAGAAATGCAGATTCTCAGCGGTTAAAAGCA
CCGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGT
GGCTCATAACCTTCTGTAATGGGATCCAATGCCCTCTTCTAGTCTGAAGA
CAGCTACAGGATACTCATATACCTGAAATAAATAAAAATCTTAAAAAAAT
AAAAGAAAAAAAGAAACGCACATTCTGTGTGTCAGATACTGACAGCCATC
AAACTTCAGGAGCCAAGAATGCAAGGCAAGTCCCCCCCAACCCCCCCCAG
CCCCCGCCCCCTTGCAGTCTGAAAAGGAACGCAGTGGAGGATGCCGGAGC
CTTCTGCCTGCAGCTAGTTCTGCATAGTTTCTCACTGGTATTTTTGNCTT
GTTATTATGCAAAAAGTCACATTGACAGGAATCCATTAGCACACGTAATA
TAATCGCATTCTTCTCTGGGTATTCCTGACTTGTGCATCACGTTTATAAC
ATAAGGCCCTACTGACAGGTCAACTC
NTTTTTTTCTTTNGTTTTTCTTCTACATCTTTTTTTCTTCCTTTTACANT
TTCAACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCTGGAAAAACGGTGCCC
ATTGTGAAAGGAGGGGAAGCTACAAGAACGGAGGTATGTGAGTAGCCCTT
GCTAACAGGGCATTGTGCATGCTAGGAAGGTGCACTATTGCTGTCAGCCT
CAGCCCCAGCCCATCTCTTAGACTTCTGTGAAAAGCCGTGATACTTGGTT
CTAAACTAACTCCGATCTAAATAAATACTAAACAAAATAAGCTTACAATT
CATATTATGCTGTCAATGTACTACTTACCAAGCATAAATATTTATTAATG
TCCCTTAGTGCTGGTGTCTTTTTGACGCCCCTGCCACACAGACTTGAACT
AATCTCCTATGTGAAACTTGCCCCCCCGATAATGGCTATCCAGATATTTT
AAGTGGCCTAGGCCACTAGTCCCCTAATTATTCTTCCTAAACAAAAAATC
ATTTTCTTTTTCTTTTTTATATTAAAAATTAATCTCTCAACTGGGTGTTC
AGAACACTCCCTCACTCTAACACTACCTCCTTTTTTATATATATAAAAAA
TAATAATAATAAAATTATTTTAATAAAAATCACAGAGTAGTCTGATCTGT
TCTATCTTATTTTTCTTTTCCTTTACTCATATTAACTTTTAATTTTCCAT
CCTAACTTTTTCTCTTTCTTCAATTATTTATCTTATATTCTCTTTTTTCT
CTTCTCTACTACTCACCAAAATATATATCCATCACATTATTTGATGTCTC
CACTATATTATTTAATTCTAATTTCCTCTACAATTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_b10.b1 MSMg01no197_b10.b1 CHROMAT_FILE:
MSMg01no197_b10.b1 PHD_FILE: MSMg01no197_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:50 2005
         (544 letters)



>mm_chr10_93190406_93191349
          Length = 944

 Score = 1013 bits (524), Expect = 0.0
 Identities = 536/540 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagacagcctggtctagagtgagttccaaggcagacaaacacaaagaaatcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagacagcctggtctagagtgagttccaaggcagacaaacacaaagaaatcca 264

                                                                       
Query: 65  gtcctaaaaaaaaaaaaaaaaaaggaaaaaaaaaaagaagaatgagtataaaatatatgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcctaaaaaaaaaaaaaaaaaaggaaaaaaaaaaagaagaatgagtataaaatatatgc 324

                                                                       
Query: 125 taggaactcagaactgaaccataacctctccccagcccaccaatctccctaagaaatgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taggaactcagaactgaaccataacctctccccagcccaccaatctccctaagaaatgca 384

                                                                       
Query: 185 gattctcagcggttaaaagcaccgactgctcttccagaggtcctgagttcaaatcccagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattctcagcggttaaaagcaccgactgctcttccagaggtcctgagttcaaatcccagc 444

                                                                       
Query: 245 aaccacatggtggctcataaccttctgtaatgggatccaatgccctcttctagtctgaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaccacatggtggctcataaccttctgtaatgggatccaatgccctcttctagtctgaag 504

                                                                       
Query: 305 acagctacaggatactcatatacctgaaataaataaaaatcttaaaaaaataaaagaaaa 364
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 acagctacaggatactcatatacatgaaataaataaaaatcttaaaaaaataaaagaaaa 564

                                                                       
Query: 365 aaagaaacgcacattctgtgtgtcagatactgacagccatcaaacttcaggagccaagaa 424
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagaaatgcagattctgtgtgtcagatactgacagccatcaaacttcaggagccaagaa 624

                                                                       
Query: 425 tgcaaggcaagtcccccccaaccccccccagcccccgcccccttgcagtctgaaaaggaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 tgcaaggcaagtcccccccaaccccccccagcccccgcccccttgcagtctgagaaggaa 684

                                                                       
Query: 485 cgcagtggaggatgccggagccttctgcctgcagctagttctgcatagtttctcactggt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cgcagtggaggatgccggagccttctgcctgcagctagttctgcatagtttctcactggt 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no197_b10.g1 MSMg01no197_b10.g1 CHROMAT_FILE:
MSMg01no197_b10.g1 PHD_FILE: MSMg01no197_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:50 2005
         (268 letters)



>mm_chr10_93325260_93325927
          Length = 668

 Score =  511 bits (264), Expect = e-149
 Identities = 267/268 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgctggaaaaacggtgcccattgtgaaaggaggggaagctacaagaacggaggtatgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 468 acgctggaaaaacggtgcccattgtgaaaggaggggaagctacaagaatggaggtatgtg 409

                                                                       
Query: 61  agtagcccttgctaacagggcattgtgcatgctaggaaggtgcactattgctgtcagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agtagcccttgctaacagggcattgtgcatgctaggaaggtgcactattgctgtcagcct 349

                                                                       
Query: 121 cagccccagcccatctcttagacttctgtgaaaagccgtgatacttggttctaaactaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cagccccagcccatctcttagacttctgtgaaaagccgtgatacttggttctaaactaac 289

                                                                       
Query: 181 tccgatctaaataaatactaaacaaaataagcttacaattcatattatgctgtcaatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tccgatctaaataaatactaaacaaaataagcttacaattcatattatgctgtcaatgta 229

                                       
Query: 241 ctacttaccaagcataaatatttattaa 268
           ||||||||||||||||||||||||||||
Sbjct: 228 ctacttaccaagcataaatatttattaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)