BAC Information

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BAC

Clone NameMSMg01-197D08
Chromosome10 (Build37)
Map Location 21,241,569 - 21,242,236
singlet/doubletsinglet
Overlap genenone
Upstream genePde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906
Downstream gene1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197D08.T7 (MSMg01no197_d08.b1)MSMg01-197D08.TJ (MSMg01no197_d08.g1)
ACCAG385033AG385034
length725825
length of high quality
(start - end)
672 (46 - 717)40 (121 - 160)
definitionCHROMAT_FILE: MSMg01no197_d08.b1 PHD_FILE: MSMg01no197_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:00 2005CHROMAT_FILE: MSMg01no197_d08.g1 PHD_FILE: MSMg01no197_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCACCACTAATGTTGACCTGACTGAATTTTAGTTAATACTACAC
AAAAGCAACCGTAGTGGTGGGCCCTCCATAAGACATGGCTCCCTTCTTTT
CTTGATAAAAGTCAGAAAACTCAGCTGTCCCCCGGCCCCCAGCCGTCTTT
GCCTGTTGTCCTTCTCACCTTCCCTGCGTACTATGATAATAATGTTATGC
CTGAAGGTGGAAGAGCAAAGTAAAGACAAATGCACCACGTTGAAGATGGC
CGCCCATGTATGGATAGAGGATGCTTCCTGAATGGTGCCTCATCCCTGGC
TGCTCACGTCCAGCATCTGTGTAACATCAGATCTGCAGACTCCAGTTGGT
TTCAGTGCCATGCAGCCAAACACAACCTCGAGTAATGCTGCCTGAATAGA
CAGCCACTTCCATAGTGACGGCGCAGACCAAGTGCTGTAGCGTCTACTGC
TACGTAGCCTAGACTATTGGGGATTTCAGTTTGACTCTCTTTTCTGCCTT
CTTACTCCCCTAGCTCTTCCTTTTGATGCTATTTGAGCTTGCTTTGTCCT
CCTTTATACCATGACCTGCCAAACATGATGCCCTCCTCCTACCCTGCCTG
TCATCTATCGTTGTTATGGGCAACCACACAGTTCTATGTTCTCATTGAAA
ACCTAAAGGAACCAAGACGTGGTGG
CTCTTCCTTTTCTTTTTTCTANTTCTTTTTTTTACATTTTTTTTTTTTTC
TATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTACGGGCAGCAGCCGTCTATTCACATC
GGGCTAAGGNTTATATTTTTTTTTTTTCCTTTTCTTTTTCTCCTTTCCCT
CCTTCATAATATTGTCTATTATAAATATCTTTCTTCGGTATCAATTTTTT
TATTTTTAAACCCTCGCCATTCGACCTGTTAGGTTCTTCAGCAAACTCCG
TTTATAATCCATATATTTTAATTACCAATTCCTTTATGTGGTCGGGCCCC
CCTTTTTCATTTCCTTTTTTTTATTTGCCCCCTTTTTGTGCAGTGGGCTT
TTTAATATTTTTGTTTTTTTATGGTCTTTGATTTTTTTTCAAAGTTTTTT
CTGAAATTTTTTTCTTTTGTTTTATCCTTTTGGTTTTTTCTTATTTTTTT
GAATTCTCTTTTAACCCAAAAATTTTTTCCCTTTTTTATCCCCCTTTCCT
CCTCTTTTTTCTCCTCTTTGTTTTTTTTCCTTATAAAATATATAACATCT
CCCACCCTGCGATTTTTTTTAAATAATAAACTTTTTTTTTTTTTTTTTAT
GGCGTATTCATCTCATTTTGTCTTATTAGATGCTTTATTCTATTTTTTTT
TTTCTTTTTTTTTTTTTTCTCTTCCCCCCCCCCCCTCCTATCATTTTTTA
GTCAATAAATATATATATCTTTATCGATATCTAATACTTTATATTATATA
TTTTTTTTGTTTTTCTCTCTTCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_d08.b1 MSMg01no197_d08.b1 CHROMAT_FILE:
MSMg01no197_d08.b1 PHD_FILE: MSMg01no197_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:00 2005
         (672 letters)



>mm_chr10_21241365_21242436
          Length = 1072

 Score = 1185 bits (613), Expect = 0.0
 Identities = 655/669 (97%), Gaps = 2/669 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcaccactaatgttgacctgactgaattttagttaatactacacaaaagcaac 64
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcgccactaatgttgacctgactgaattttagttaatactacacaaaagcaac 264

                                                                       
Query: 65  cgtagtggtgggccctccataagacatggctcccttcttttcttgataaaagtcagaaaa 124
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 cctagtggtgggccctccataagacatggctcccttcttttcttgataaaagtcaggaaa 324

                                                                       
Query: 125 ctcagctgtcccccggcccccagccgtctttgcctgttgtccttctcaccttccctgcgt 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcagctgtcccccggcccccggccgtctttgcctgttgtccttctcaccttccctgcgt 384

                                                                       
Query: 185 actatgataataatgttatgcctgaaggtggaagagcaaagtaaagacaaatgcaccacg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 actatgataataatgttatgcctgaaggtggaagagcaaagtaaagacaaaggcaccacg 444

                                                                       
Query: 245 ttgaagatggccgcccatgtatggataga-ggatgcttcctgaatggtgcctcatccctg 303
           |||||||||||| |||||||||| | ||| || |||||||||||||||||||||||||||
Sbjct: 445 ttgaagatggccacccatgtatgcacagacgg-tgcttcctgaatggtgcctcatccctg 503

                                                                       
Query: 304 gctgctcacgtccagcatctgtgtaacatcagatctgcagactccagttggtttcagtgc 363
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 504 gctgctcacgtccagcatctgtgtaaaatcagatctgcagactccagttggtttcagtgc 563

                                                                       
Query: 364 catgcagccaaacacaacctcgagtaatgctgcctgaatagacagccacttccatagtga 423
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 catgcagtcaaacacaacctcgagtaatgctgcctgaatagacagccacttccatagtga 623

                                                                       
Query: 424 cggcgcagaccaagtgctgtagcgtctactgctacgtagcctagactattggggatttca 483
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 624 cggcgcagaccaagtgctgtagcgtctactgctacgtagcctatactattggggatttca 683

                                                                       
Query: 484 gtttgactctcttttctgccttcttactcccctagctcttccttttgatgctatttgagc 543
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtttgactctcttttctgccttcctactcccctagctcttccttttgatgctatttgagc 743

                                                                       
Query: 544 ttgctttgtcctcctttataccatgacctgccaaacatgatgccctcctcctaccctgcc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttgctttgtcctcctttataccatgacctgccaaacatgatgccctcctcctaccctgcc 803

                                                                       
Query: 604 tgtcatctatcgttgttatgggcaaccacacagttctatgttctcattgaaaacctaaag 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgtcatctatcgttgttatgggcaaccacacagttctatgttctcattgaaaacctaaag 863

                    
Query: 664 gaaccaaga 672
           |||||||||
Sbjct: 864 gaaccaaga 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)