Query= MSMg01no197_j02.b1 MSMg01no197_j02.b1 CHROMAT_FILE:
MSMg01no197_j02.b1 PHD_FILE: MSMg01no197_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:30 2005
(317 letters)
>mm_chr10_22697805_22698521
Length = 717
Score = 567 bits (293), Expect = e-166
Identities = 305/309 (98%)
Strand = Plus / Minus
Query: 5 gaattctttggcttaccagcataaaaatctgagtagttcatttgctagacacaatccaaa 64
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 513 gaattctttggcttagcagcataaaaatctgagtagttcatttgctagacgcaatccaaa 454
Query: 65 gtactccaacaaaatcatcttttccatgaacctttaatctccaactccatggagatttat 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 453 gtactccaacaaaatcatcttttccatgaacctttaatctccaactccatggagatgtat 394
Query: 125 ccatttgtgttctgtggagctgagggaccctataacaggaaaagcaaaggtgcatgggtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccatttgtgttctgtggagctgagggaccctataacaggaaaagcaaaggtgcatgggtt 334
Query: 185 ttgtgtacatttgtgccctgttctgaacgttaactattgaccaacagaacctcaaagaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttgtgtacatttgtgccctgttctgaacgttaactattgaccaacagaacctcaaagaga 274
Query: 245 agctcatttgcatccattgtgagtttggaaacatctttaaagaagctgcagggcttaatg 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 273 agctcatttgcatccattgtgagtttggaaacatcttgaaagaagctgcagggcttaatg 214
Query: 305 actttagaa 313
|||||||||
Sbjct: 213 actttagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no197_j02.g1 MSMg01no197_j02.g1 CHROMAT_FILE:
MSMg01no197_j02.g1 PHD_FILE: MSMg01no197_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:30 2005
(530 letters)
>mm_chr10_22606459_22607389
Length = 931
Score = 957 bits (495), Expect = 0.0
Identities = 522/531 (98%), Gaps = 2/531 (0%)
Strand = Plus / Plus
Query: 1 tccctgacctggatgcttttatgtgtcaatgtgacacaagcaacagtcttcaaagagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tccctgacctggatgcttttatgtgtcaatgtgacacaagcaacagtcttcaaagagaaa 261
Query: 61 agagcctcagctgaggaaatgccttcatgaaatgcagttgtagggcattttctccattag 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 262 agagcctcagctgaggaaatgccttcatgaaatccagttgtagggcattttctcaattag 321
Query: 121 tgatcaacgggggggaggggccaatcaatggtcagcggtgccatccctgggctggtagtc 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgatcaacgggggg-aggggccaatcaatggtcagcggtgccatccctgggctggtagtc 380
Query: 181 ctggattcgataagaaagcaggttgaataagccctgggaagcaagccagtaagcagcacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggattcgataagaaagcaggttgaataagccctgggaagcaagccagtaagcagcacc 440
Query: 241 cctccatggcttctgcatcagctcctgcccccaagatccttccctgttggaattccgatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctccatggcttctgcatcagctcctgcccccaagatccttccctgttggaattccgatc 500
Query: 301 ctgacttccttcagtgatgaacagtggtatagaagtgtaagatgaataaacctacatatt 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttacttccttcagtgatgaacagtggtatagaagtgtaagatgaataaacctacatatt 560
Query: 361 gctttttagtcatgctgttttgttgcagcactagaaacctaactaaggcactcgtgggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctttttagtcatgctgttttgttgcagcactagaaacctaactaaggcactcgtgggaa 620
Query: 421 ggaaggatgttggctaatcccatttcaccacagaaagggagaatcggattctcttttcct 480
||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||
Sbjct: 621 ggaaggatgttggctaatcacatttcaccacagaaatagagaatctgattctcttttcct 680
Query: 481 cggatttt-gtatttgctactcagaatatcagtgcaacatcctccaagcta 530
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cggatttttgtatttgctactcagaatatcagtgcaacatcctccaagcta 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space: 478920
Effective search space used: 478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
