BAC Information

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BAC

Clone NameMSMg01-197M15
Chromosome10 (Build37)
Map Location 7,024,463 - 7,024,860
singlet/doubletsinglet
Overlap genenone
Upstream geneAkap12, Mthfd1l, Plekhg1, Iyd, Ppp1r14c, EG666520
Downstream geneLOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197M15.T7 (MSMg01no197_m15.b1)MSMg01-197M15.TJ (MSMg01no197_m15.g1)
ACCAG385374AG385375
length692735
length of high quality
(start - end)
366 (45 - 410)524 (77 - 600)
definitionCHROMAT_FILE: MSMg01no197_m15.b1 PHD_FILE: MSMg01no197_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:47 2005CHROMAT_FILE: MSMg01no197_m15.g1 PHD_FILE: MSMg01no197_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTACATTAATGAATTCTTATGAAGACACTGTAACAATTCTTTTGA
AAGCTTACAATTTAGGACCTTATATGGTATCATCAGCCAGGAATCCAAGC
TACGTCATCTTTTGACTGCAGTGCAAAATATAGGTGCTGCCTCCCCTCCT
GGAGGAAATGTTGGGAATTCCTCAAGAAAATGGGCTTCTGAACTGTCAAC
ATTTCTGGATATTTAATGGCTATAAGATTGTACACTTCAAAAGACAATAC
TTCGGAATATAAATGATTTGGGTGCAGCTCTCTGAGATGGTAATTTTCCA
TCATTATCATCTCACTTTGCGCCCTAGAGTTGCACAATAGAGATCGTCAG
TGTGGTTACTCACCCAGTGCTGCCACAGCAAGAATACTGACTGCTTGTTT
ATGTTGGAGTCACTCCTGCTGCTGGGGAATACCATAAAACATAATGGTAA
TGTCTCCATGAGAGGTATTCAGCTTTAAGTAATAGTGAGGCAACAAATGA
GCTGGAATAGAGGGTGCAGAGTGAATCACTACTGGGAAGCAGTCCCTGAG
ATCAGGGGAGCCCTTTAATCATCACATTGGCATTACAGCTTTAATAAGTT
GGCGTTTATCCATTGTTTTTTGCTCACAAACAGTAGCATTGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGCACTGAGCCATGGTATCGAAC
ATCCATCTTTGTCAGCCTATAAAGGAACAAAAACCCACAAACAATGAGTT
CATTTGCAGGTGCAGGAAGTGCTACCTGGTGGTTGGCTCTGACTCAAGCC
ATTTTAGACATAATGGTTCATAAAGCTCCGTGGAATTTCTTAAGATTAAT
GAAGATAACATGGAATGTGATTGGTATGACCTTGCTCTGAGTTATCTTTC
TGTGTCAAAGACTGGTAGGCATGTTACAGCAACAATATGAAATAGCTGGC
AGCACCGAACAAATGGTTATAGCTATGCTACAAGAGGGGCAGACCTCAAT
GGTCCGTTGTCTACCTTTACTGACACAGGGTCTGCCACTGGTCTGGGGTT
CATTGATTAGGTGAGATTGGGTAGCCACTGACTGAGTACTACAACCATTC
TTATTTAAACTTGGGCTTGAGGGAGGATTAAAACCAGGGTCTCATGATTG
CAAGGCACACACTTTACTGACTGAGTTATCCACATAGCTCATTGCTTAAT
GTTTCGTGTTATGCATAAATTATGGCCTCCAAGCATTTAGATGAGAGACG
AAACATCCCTATTCTAACATTACAGAGTCTAAATCTTTCCCAATCAAATT
CTTTGAGTACAGCTGGAAAACTGTGCATAAAACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_m15.b1 MSMg01no197_m15.b1 CHROMAT_FILE:
MSMg01no197_m15.b1 PHD_FILE: MSMg01no197_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:47 2005
         (366 letters)



>mm_chr10_7024286_7025051
          Length = 766

 Score =  534 bits (276), Expect = e-156
 Identities = 351/398 (88%), Gaps = 36/398 (9%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtacattaatgaattcttatgaagacactgtaacaattcttttgaaagcttac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaattctgtacattaatgaattcttatgaagacactgtaacaattcttttgaaagcttac 237

                                                                       
Query: 65  aattta---------------------------ggaccttatatggtatcatcagccagg 97
           ||||||                           ||| |||||||||||||||||||||||
Sbjct: 238 aatttagctagcacctggaactatctactggtgggatcttatatggtatcatcagccagg 297

                                                                       
Query: 98  aatccaagctacgtcatcttttgactgcagtgcaaaatataggtgctgcctcccctcctg 157
           | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 298 agtccaagctacgtcatcttttgactgcagtgcaaaacataggtgctgcctcccctccta 357

                                                                       
Query: 158 gaggaaatgttgggaattcctcaagaaaatgggcttctgaactgtcaacatttctggata 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gaggaaatgttgggaattcctcaagaaaatgggcttctgaactgtcaacatttctggata 417

                                                                       
Query: 218 tttaatggctataagattgtacacttcaaaagacaatacttcggaatataaatgatttgg 277
           ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||
Sbjct: 418 tttaatggctataagattgtacatttcaaaagacaatacttcagaatataaaagatttgg 477

                                                                       
Query: 278 gtgcagctctctgagatggtaattttccat-----catt----atcatctcactttgcgc 328
           ||||||||||||||||| ||||||||||||     || |    ||||| |||||||| ||
Sbjct: 478 gtgcagctctctgagatagtaattttccatgtagtcagtcaaaatcatttcactttgtgc 537

                                                 
Query: 329 cctagagttgcacaatagagatcgtcagtgtggttact 366
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cctagagttgcacaatagagatcgtcagtgtggttact 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)