BAC Information

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BAC

Clone NameMSMg01-198G03
Chromosome10 (Build37)
Map Location 103,988,605 - 103,988,900
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198G03.T7 (MSMg01no198_g03.b1)MSMg01-198G03.TJ (MSMg01no198_g03.g1)
ACCAG385734AG385735
length749723
length of high quality
(start - end)
320 (36 - 355)302 (77 - 378)
definitionCHROMAT_FILE: MSMg01no198_g03.b1 PHD_FILE: MSMg01no198_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:36 2005CHROMAT_FILE: MSMg01no198_g03.g1 PHD_FILE: MSMg01no198_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGAA
GTTAGGCTCCAGAGAACCAAATAATGCTACTTAAAATTAGCACAGAGCTA
AACAGAGAGTTCTCAACTGAGAAATCTCAAATGGCTGAAAAGATCTTAAA
GACATGTTCAACATTCTTAGTCATCAGGGAACTACAAATCAAAAGGACCC
TGAGATTCCATCTCACACCAATCAGAATGGCTAAGATCAAAAAATCGCAG
GAGAATCAGGAAAGGATATAAAAAGAAAATATCCAATTAAAAACATACAG
AAAAGCAGCAACAACTAGAAAAACAAAAACAAAATGCAGGTTACAGCAGA
TGCTGTTTTAGGATGCCCCCCCACCGAGGAACACTCCTCCATTGCTGGTG
GACTGCAAGCTGGTAAAAAACACTTTTGGCAATCAATCTGGTAGTTCCTG
ACAAAACTGGAAATAATTCTAACTGAAGATCCAGCTCTACCACTACTGAA
CACATACCCAAAAGATGTTTCAACTTATAACCAGGACACATGCTTCCACT
ATGTTTATAGCAACCTTATTTTATAATAGCCAGAAGCTGAAAACAGCCCA
GATGTCCCTCAACATAGAATGGATAACCGCAAATGTGCATTTACACCATT
GGAGTACTTACCTCACCTATTAAAAAACTTTGACTTCATTTTGCAGGCAT
ATGGATGAAAACAGGAAAATTTATTCCTTGAGTGAGGTAACCCAAGACN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAATATATTGACATATTTGAAC
ATCATTATATTTTGGATAATAACTATACTGACCTGAAGAGCTTCAGACAT
GAGTCATACAAATATTTGATTTTACTTGTACGGAAGGCAAACATTGATTA
ATACATATTTATAGTCTCCAAAAAAAAAAAAGAGAGAAATATCACATACC
TGGTACCAAGAGCACAAAGAGATCATGCCATGGTGGAAGCTGGTTCCTAC
TACAGTAAAGTCATCATCCGTGCACTCTATATACAGTACCCGAAGAAGAC
ACTGACTTTGCTGTTGTTCTTTATCCCCCACCCCAGATGTCATCAGGAAG
AGATACTTGGAAGGGAGTTAACCATGGTATCAAAACTAAAACATATACGG
ATATTTAATGAATTAAAAAGGTGAACAAATGTTTTGGGAGGTGATGGGAC
CATAGAAAGTTGATTAAAGCACTTAGAGGTGGAACATTATGGAACTGGCT
AGATCCTGAGGGTTTGGACAACATGAATTCAATAATATATTGACATATAC
AAATATTATGCTTTGGAAAGAGTTTACATACTTGGGGACCCAGACTACAT
GAAAAAAGGAGGTCAACGGGATTAGGCCTTTGAAGGGATATCTGTTAGCC
TGGCCCTGTCTTGTATCCACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_g03.g1 MSMg01no198_g03.g1 CHROMAT_FILE:
MSMg01no198_g03.g1 PHD_FILE: MSMg01no198_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:36 2005
         (302 letters)



>mm_chr10_103988405_103989103
          Length = 699

 Score =  547 bits (283), Expect = e-160
 Identities = 294/299 (98%), Gaps = 3/299 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaatatattgacatatttgaacatcattatattttggataataactatactgacctga 60
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 496 attaatatattgacatatttgaagatcattatactttggataataactatactgacctga 437

                                                                       
Query: 61  agagcttcagacatgagtcatacaaatatttgattttacttgtacggaaggcaaacattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agagcttcagacatgagtcatacaaatatttgattttacttgtacggaaggcaaacattg 377

                                                                       
Query: 121 attaatacatatttatagtctccaaaaaaaaaaaagagagaaatatcacatacctggtac 180
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 376 attaatacatatttatagtctcc---aaaaaaaaagagagaaatatcacatacctggtac 320

                                                                       
Query: 181 caagagcacaaagagatcatgccatggtggaagctggttcctactacagtaaagtcatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caagagcacaaagagatcatgccatggtggaagctggttcctactacagtaaagtcatca 260

                                                                      
Query: 241 tccgtgcactctatatacagtacccgaagaagacactgactttgctgttgttctttatc 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tccgtgcactctatatacagtacccgaagaagacactgactttgctgttgttctttatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 699
Length adjustment: 9
Effective length of query: 293
Effective length of database: 690
Effective search space:   202170
Effective search space used:   202170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)