BAC Information

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BAC

Clone NameMSMg01-198K15
Chromosome10 (Build37)
Map Location 98,699,852 - 98,700,134
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667438, EG432494, Atp2b1, Wdr51b, Galnt4
Downstream geneDusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198K15.T7 (MSMg01no198_k15.b1)MSMg01-198K15.TJ (MSMg01no198_k15.g1)
ACCAG385894AG385895
length736722
length of high quality
(start - end)
---283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no198_k15.b1 PHD_FILE: MSMg01no198_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:58 2005CHROMAT_FILE: MSMg01no198_k15.g1 PHD_FILE: MSMg01no198_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTATCTCACCCCTAACTGCGTGGCTGCTGTCAGAACAGCCCAGA
GCTGTGTGCTATCAAGACCTCTGGCCATCTCTGAGTGATTGGCCTCCTTA
TGAAGTATCTCAAGGAAAGCGACCACGCTTATTTTACTTAACTGCTAGTA
GCAACCAGAGGCAGTACGTGTAATTTTTCTCTGTATTCATTTTTATTGAG
GTTTCCTGTATGCGTGTAATGTGCTTTGCTCATATCTAAACCTCGCCCCC
TTCCTTCTAACTTTGTCCCTAATCTCCTCCCCACCCCCCAACATAGATAT
TTAGTAATAGGATTTTTTTTATCACCCCCCCCCGCCTTGCAAGATCACTC
AGTGTAGTAAAGTGCTTGATACACAAGTGTGAAGACCTGATCTTGATTCC
CAGTACCCATGTAAAAGCCACATGCACACTTGCAATCCTGTCACTGATTA
GGAGGAGCCAGGAGATCCCTGGAGTCCATTTCGCTAGCTAGCTCCTGCTG
AGATGTCCAAAAGGATCTGCTTACCGATTCTTACACATTGCTAGTCCAAA
GTTCCAGAACCCTTTTATCCTTCCTCCAGAATGTCAATATGCTCAAATTT
GTATTCATGATACCCTCCCCCTGGGTACCTAACTCCAAATTGCGTAACTT
TTCTGTCATTCTTGTTATCATCTCCATGCACGACGA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCACATGACGAAGACCAGTAC
TCAAACACCTTTCCTAAGCAGCAGGACCTGACAGCACAGAGCTTCCCACG
GAGATGTGGCAAGGCTGTGTGAACTGTGTGGGCTGTGGCCACGTAGGTGA
GCATGTCTGTAGGAATTCTGACGTGGTAAGTAGCCCTAGGAGACACAGTC
ATTCTTCGAGTGTGCTTGTTGATGTTGGAGTGTGGCTTGCTCTCCAGGAC
TGTTTTCAAGAACCTACTTAAACACATATCCTTGGGCCGTTGGAGAGAAG
AGGGAAAGAGTTACGTGNAGCCCCTGNACGNTTCCTGGATAATATTTTAG
GAGGAAATGATGTATGTGTCACAAGAATCAGAAAACAGCGATGGAAGAAG
ACATTCTTCATAAATAAGAACTTGCTGCCCATGTTCCTATTATTACTGCG
GCTCTGAGATATAGCTTGAAATCTGATATGGTAATCCCTCGAGGGTTGCT
CTTTTTGCTCTGAATTACTTTGGCAATCTGGAGCGGTTTCATGCGAATTT
TAGGATTCTCTTTTTCCTATTTTTGTACAGAATAGCATGAGGATTTTCGA
TTGGAATTATACTGAATCTGGATATTGTTTCCTGTANGATGGCCATTTTC
ACAATATTAATTCTACCAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_k15.g1 MSMg01no198_k15.g1 CHROMAT_FILE:
MSMg01no198_k15.g1 PHD_FILE: MSMg01no198_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:58 2005
         (283 letters)



>mm_chr10_98699652_98700334
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccacatgacgaagaccagtactcaaacacctttcctaagcagcaggacctgacagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tttccacatgacgaagaccagtactcaaacacctttcctaagcagcaggacctgacagca 424

                                                                       
Query: 61  cagagcttcccacggagatgtggcaaggctgtgtgaactgtgtgggctgtggccacgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cagagcttcccacggagatgtggcaaggctgtgtgaactgtgtgggctgtggccacgtag 364

                                                                       
Query: 121 gtgagcatgtctgtaggaattctgacgtggtaagtagccctaggagacacagtcattctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtgagcatgtctgtaggaattctgacgtggtaagtagccctaggagacacagtcattctt 304

                                                                       
Query: 181 cgagtgtgcttgttgatgttggagtgtggcttgctctccaggactgttttcaagaaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cgagtgtgcttgttgatgttggagtgtggcttgctctccaggactgttttcaagaaccta 244

                                                      
Query: 241 cttaaacacatatccttgggccgttggagagaagagggaaaga 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cttaaacacatatccttgggccgttggagagaagagggaaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)