BAC Information

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BAC

Clone NameMSMg01-199H14
Chromosome10 (Build37)
Map Location 66,437,824 - 66,437,978
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199H14.T7 (MSMg01no199_h14.b1)MSMg01-199H14.TJ (MSMg01no199_h14.g1)
ACCAG386402
length745778
length of high quality
(start - end)
---164 (87 - 250)
definitionCHROMAT_FILE: MSMg01no199_h14.b1 PHD_FILE: MSMg01no199_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:02 2005CHROMAT_FILE: MSMg01no199_h14.g1 PHD_FILE: MSMg01no199_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CTCTTCTCTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTCAAATGCGA
GGGGGCAGATCCAAGGAGGAGAGGAAGAGGTGGCTCAGTGGTTTTGGTCA
GTGGTTATGGAATAGACAGAGCTTGCTGTTCATGACTAAAAGCTCAGATC
TTAGTACCCATATCGAACAATTCACAAATACCTGTCACTCTATCCCGAAG
AGATCATTATGTCCTCTTCTGACATCTTTGGGCACCTCATACGTATGGTG
AGAATTCTGGAATTTGGGTTTCTTTACATTTCTTTTTTCTGGGCGGTGGT
GGTGCATGCCCTTAATCCTTGTATTTGCCCCCCTCCGCCTGTCGGCTTTC
TGACTCCGCTCTTATACCGTTCTTTATCCCCCCCCTCTATCATCTCCCTG
CTCACCATCTTCTCCTTTCCTGCCACTATCCCCCATTCTTTTCTCCCTTC
TACCACTTTACCTTACTATCCCTTTAATTTGCCCCTGCTTTTTACTTGTT
TGATCCATTTTTTGCTCCATCCCCATCTCCCTGGTCCTTCCTTATCCCCT
CCCTCTCCCCCTTTTTCCTTAATTATTATTACTCTCCTACTCCCCCCATT
CCTTATATTTTGATTTCTTTCTTTTTTCCCCTCATCTTATTTTTTTTTTT
TATTTTATTCTTGCTTACTTTTCCCCACTCTTCTTACCTCCACCTCTCTT
TTCATCCTTATACCTCCTCCCCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_h14.g1 MSMg01no199_h14.g1 CHROMAT_FILE:
MSMg01no199_h14.g1 PHD_FILE: MSMg01no199_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:03 2005
         (164 letters)



>mm_chr10_66437574_66438137
          Length = 564

 Score =  271 bits (140), Expect = 2e-77
 Identities = 154/164 (93%), Gaps = 9/164 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctcaaatgcgagggggcagatccaaggaggagaggaagaggtggctcagtggttttg 60
           |||||||||||||||||||||||||||||||||||||||||         ||||||||||
Sbjct: 405 tgtctcaaatgcgagggggcagatccaaggaggagaggaag---------agtggttttg 355

                                                                       
Query: 61  gtcagtggttatggaatagacagagcttgctgttcatgactaaaagctcagatcttagta 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 354 gtcagtggttatggaatagacagagcttgctgttcatgactaaaagttcagatcttagta 295

                                                       
Query: 121 cccatatcgaacaattcacaaatacctgtcactctatcccgaag 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cccatatcgaacaattcacaaatacctgtcactctatcccgaag 251


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)