BAC Information

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BAC

Clone NameMSMg01-199K22
Chromosome10 (Build37)
Map Location 79,977,350 - 79,977,689
singlet/doubletsinglet
Overlap geneOnecut3
Upstream genePpap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a
Downstream geneAtp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199K22.T7 (MSMg01no199_k22.b1)MSMg01-199K22.TJ (MSMg01no199_k22.g1)
ACCAG386526AG386527
length763782
length of high quality
(start - end)		484 (76 - 559)340 (83 - 422)
definitionCHROMAT_FILE: MSMg01no199_k22.b1 PHD_FILE: MSMg01no199_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:19 2005CHROMAT_FILE: MSMg01no199_k22.g1 PHD_FILE: MSMg01no199_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCC
GCGGAATTCACTAAGTATTTACGAATGACTTGGAACTTCTGAACTTCCCA
CCTCACTTTCAGGAAGCTAAGATAACAGATGTTATGCACTCCCACGAGTG
ACATATGTGGTGCTGGGAATGGGACCCAGAGCTTTGGGCGTCCTAGCTCT
GTGCACTGAGTCCCAGCCCTGAGTCCCATTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCT
CTTCCTCTTCTTCTTCCTCTTCTTCTTCTCCTCCTCCTCCTCCTCTTCCT
CCTCTTCTTCTTCTTCTTCTTCCCCCCCCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTTCATTCTTT
CTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCC
TTCTTTTCCCAAGACAGGTTTTCTCTGCGCACCCTTGGTTGCTCTATGAC
TTACTTCTATTACCAGGCCGCTCCTCTACCCCTACCATTGTCTGCCTCTG
CTTCTCCGACCCGCTTATATTTCTCTTTTATGCCCTTACTACCCGTCTGC
CCATCTTTCTCTCTCTTTTTTCCCTTTATCCCTTATTCCTCCCTCTTTTT
CTTCTCCTTCCCN

CCCCCCCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGATTTCCAGAACTT
TGCATCCAAGGGACACCGATGGTGCCTTCATGGCTCCCCCAGATCTGGGA
GAATCTGATGTCCCTCTCCTGAGATCTGGGGTGTCATCTTTGCTCTCTGG
TGACCTTGTTCCCTGTGTAGCATTCTTCACATAGCAAGGTGCTTATAGTG
AACTCAGCCAGGGGTGCTGGGATGGAGGCATCCACAGGGCAGCCCTCATC
TCACATTTGCCACTGTCTCCTTGGAGACAGGGGGCTCCCCACAGCTTCCC
TCCCCGGCGTTAAGGCAGGGGATTGTTGGCACAGGCTATCCAGGCCGCTG
GGGTCGGGGTGGCGGCTGGGGTGCCCCCCGTCTGCTGTGAGGGGCCATCC
TGTGGAGTGGGCGTGGGGGTGTTTCCGTGTCTCGTACGTTTTTATTGGCC
CTGTTCCTGCTGCCTGTATCCTTCCCGTTTTTTCCTCCCCGTCATTTTTC
TCCACTTATTTTTCCCCTCCCCCCCCCCTCTTTTTTTCTGTCCCCGTTTC
TTTTTTCTTCCTTCTTTTCCCCTCCTCTTTTCCCCTTTTTTCTTTTCTTT
CCACTCATCACACCTCCCCTTCCCATGTTCTCACTTTTTTCACATATTTT
ATCAACTTTTTCACTATTACTTATACCACTTTTGATTACTACTATTCTTT
CCACCTCTTTCCTTTTTCCTCCTTTTTCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_k22.g1 MSMg01no199_k22.g1 CHROMAT_FILE:
MSMg01no199_k22.g1 PHD_FILE: MSMg01no199_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:20 2005
         (340 letters)



>mm_chr10_79977150_79977889
          Length = 740

 Score =  658 bits (340), Expect = 0.0
 Identities = 340/340 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagatttccagaactttgcatccaagggacaccgatggtgccttcatggctcccccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cagagatttccagaactttgcatccaagggacaccgatggtgccttcatggctcccccag 481

                                                                       
Query: 61  atctgggagaatctgatgtccctctcctgagatctggggtgtcatctttgctctctggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atctgggagaatctgatgtccctctcctgagatctggggtgtcatctttgctctctggtg 421

                                                                       
Query: 121 accttgttccctgtgtagcattcttcacatagcaaggtgcttatagtgaactcagccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 accttgttccctgtgtagcattcttcacatagcaaggtgcttatagtgaactcagccagg 361

                                                                       
Query: 181 ggtgctgggatggaggcatccacagggcagccctcatctcacatttgccactgtctcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggtgctgggatggaggcatccacagggcagccctcatctcacatttgccactgtctcctt 301

                                                                       
Query: 241 ggagacagggggctccccacagcttccctccccggcgttaaggcaggggattgttggcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggagacagggggctccccacagcttccctccccggcgttaaggcaggggattgttggcac 241

                                                   
Query: 301 aggctatccaggccgctggggtcggggtggcggctggggt 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aggctatccaggccgctggggtcggggtggcggctggggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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