BAC Information

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BAC

Clone NameMSMg01-201F06
Chromosome10 (Build37)
Map Location 76,945,610 - 76,945,918
singlet/doubletsinglet
Overlap genenone
Upstream geneMcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1
Downstream gene1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201F06.T7 (MSMg01no201_f06.b1)MSMg01-201F06.TJ (MSMg01no201_f06.g1)
ACCAG386930AG386931
length708807
length of high quality
(start - end)
323 (11 - 333)211 (76 - 286)
definitionCHROMAT_FILE: MSMg01no201_f06.b1 PHD_FILE: MSMg01no201_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:25 2005CHROMAT_FILE: MSMg01no201_f06.g1 PHD_FILE: MSMg01no201_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCCTATCCGGAGAGGATCCGCGGAATTCCAAGGAAGCCAGCAATTCCA
TTGGCCATCTACAAGCTGCTTATGCACCACACATACATCTGGTGCCCACA
AATGCAGCGTGGTCTGTCAATGAGAAATCTGGAGAGCTGCCCACTGTTGC
CCACAGCCTGGATACCTGTCCTGTTCTTCTCATACTAGAGCATCTGCCAG
TGCCGCAACGCTCATATTCACGCAGTCTAGGCAGGAATGAACTGGGCAGA
GGGGAAATGGTCAGAGGGCCAGGAAACGCTGTGATGTCCCCTTGTGATGG
CTTTCTCAGAGATTCACCAACAATGTCCACCTGTTTTTTTCCACCCCCCC
CCTCCCTTACACATGCTTCCTAGATTAATGGAGGTTGGCCCCCCTCGAAG
AAAATAAAGAGAAGGACGTCCTATCCACAGATACTATCCTGTCCTCTACT
CTGGTGAGAAGCTACCCAGTCTCTCATAATTTGGCCTTGGCCACCAACAC
CCACGATACTGGAGCTGCACCCATCTATCGATCCTAATCTTCCTATAGGT
CCATTCCTATATGTCTTTAACGTACGAATCATTTGCACCCAATACCCCAA
TTGTTATCCCGCTTTAATCCCTTAACATACTTTGAATCACACCACTTTGT
CAGTTCCATCCCTATTGTTTATTTTTGCTATTCTCGTCTCTCCCTTTTTT
TTTTTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTT
TTAATGGGGTTATTTGATTTTCTGGAGNTCTTTATATATATTGGATATTA
NTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGNCTTTTTGTCTTATTGACAGGGTCTTTTGCCTTACANAANCTTTGCAA
TTTTATGAANNCCCATTTGNCNATTCTTGATCTTACNNCNCCANCCATTG
CTGTACNNNTCCGATTCNNNNNNTCCTGGGCCCACACCTTCCAAGCCTTN
CCCCACTTTTTTTTCTCCCAANCCTNANCGCCCNNNGGNTTTTNTTNTAT
TTTCTTTTTTTTTTTTTCCCCCCCAAAAAAAAAAAACAACACCNNANNAA
GGGCNNCCAANCCCCACCCCCACCCCCTNNCCNCNCCCCCCCCCCCNNCC
CCNNNCCCCCCNNCNCNNCCAACCTTGCTTNTTTTGGATATTTTGTTGGG
TATTTATTACCCTCCCTAGTTNNNNNTNNNNNNNCNNNNNNNTGNNCTAT
TTTTATTTTTTTTTTTTTTTTATTGGGTAGAAAAAAATATAAAAAAAAAA
AAAATGGGGGGGGNNCNCNCCNNNCCCCCCCCTCTCTTTATCTTTTGTTT
TTGTGGGGTGGGTGTTTTTTTATCTTCACCGCACAACAAAAAANCCCCCC
CCCCCNCCCCTGTTTGTGGTGGTGGGGGTGTGGGGTTNNGGTTTTNNTTN
CGGGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_f06.b1 MSMg01no201_f06.b1 CHROMAT_FILE:
MSMg01no201_f06.b1 PHD_FILE: MSMg01no201_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:25 2005
         (323 letters)



>mm_chr10_76945397_76946118
          Length = 722

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%), Gaps = 1/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 14  ggaattccaaggaagccagcaattccattggccatctacaagctgcttatgcaccacaca 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggaattccaaggaagccagcaattccattggccatctacaagctgcttatgcaccacaca 463

                                                                       
Query: 74  tacatctggtgcccacaaatgcagcgtggtctgtcaatgagaaatctggagagctgccca 133
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tacatctggtgccca-aaatgcagcgtggtctgtcaatgagaaatctggagagctgccca 404

                                                                       
Query: 134 ctgttgcccacagcctggatacctgtcctgttcttctcatactagagcatctgccagtgc 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctgttgcccacagcctggatacctgtcctgttcttctcatactagagcatctgccagtgc 344

                                                                       
Query: 194 cgcaacgctcatattcacgcagtctaggcaggaatgaactgggcagaggggaaatggtca 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cgcaacgctcatattcacgcagtctaggcaggaatgaactgggcagaggggaaatggtca 284

                                                                       
Query: 254 gagggccaggaaacgctgtgatgtccccttgtgatggctttctcagagattcaccaacaa 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gagggccaggaaacgctgtgatgtccccttgtgatggctttctcagagattcaccaacaa 224

                     
Query: 314 tgtccacctg 323
           ||||||||||
Sbjct: 223 tgtccacctg 214


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space:   223882
Effective search space used:   223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)