BAC Information

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BAC

Clone NameMSMg01-201P17
Chromosome10 (Build37)
Map Location 99,525,145 - 99,525,481
singlet/doubletsinglet
Overlap geneKitl
Upstream geneWdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246
Downstream geneLOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201P17.T7 (MSMg01no201_p17.b1)MSMg01-201P17.TJ (MSMg01no201_p17.g1)
ACCAG387317AG387318
length687686
length of high quality
(start - end)
372 (41 - 412)337 (77 - 413)
definitionCHROMAT_FILE: MSMg01no201_p17.b1 PHD_FILE: MSMg01no201_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:37 2005CHROMAT_FILE: MSMg01no201_p17.g1 PHD_FILE: MSMg01no201_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXATCGAAAAGAGGATCCGCGGA
ATCAAGTTTGCCCAGGAAATGATTTATTCAGCTTATACTTCCACATTGCT
GTTCCTCACCAAAGAAAATCAGGGCTGGAACTCAAGCAGGTCAGGAAGCA
GGAGCTGATGCAGAGGCCATTGAGGGGTGCTGCTTACTGGCTTGCTCCCC
CTGGCTTGCTCAGCATGCTTTCTTATAGAACCCAGGACTACCAGTCCAGG
GATGGCACCCCCAAAAATGGGCCCTCCCACCTTGATCACTAATTGAGAAA
ATGCCTTACAGCTGGATCTCATGGAGGCATTTCCTCAAGGGAGGCTCCTT
TCTCTGTGATAAACTCCAGCTTGTGTCAAGTTGACCCACAAAACCATCCA
GTACAATGGCCACCACCCGCACAAAACTTAAAATAGAAAGGGAAAAAGGG
AAGGATGCTTATGAGATGAGTTGCAATTGAGGAAGTTAAATATGTTCAAA
GTATATTGTATGACATTCTCAAAGAATTAACGTAAACATTGCTTTAAGAT
TATTTAAATTGATTACTTATAAATTCTCTTGCGTGCGCCGGACTGGCCAG
CAGTAACGATGCTGCAACAAGATCCTTCTGCACACGTTTATTGGGAGAGC
TTGACTGCAGAGTCGAATAGACCCTTGTCCATATTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTCTACTATTGGGAAGAGCATG
AGATGGATAATGGTAGAGATTCACGAGGGAGGAGAATTCCATGTGCTCTC
TGGCCACTAAGTGGATTACAGGTGTGTCACCATGCCAGGCTAGTATGTAG
CATTTTACACATAGCTGCTTGGACACAGTTTGTTGCAATGAGCTAGAGAA
CAAAAAATAACAAAGAACAAAAAACAAAAGATGAACATGCGCTGCTGAGC
CATGCCACAGTTCATCAGGAAACCTGAATTCTAGTCCACATAAAACACCC
AAGAGGCAGGTGACTTCAGTGATTTGGTCTTCTTACGTCTCAATTTCTTC
ACTTATTAAACACCCATGCTGTGTTGGATAGGTAATAATGTTACTTGAAA
ATGATTTGCTATTAATCATCATACGAGTTGCTGAAAGAGCAATTGTTAAA
TTTGTCCATCAAGGCTGAAATGAACGGGAGATGGAATAGTATTACCATGG
GACCAATAATTCCCTTGGCTCTGCTCTGACCACTTCTGAGTTTGCCTAGC
ATTTTCTCACTAAATTGCTTTCAGATTATATTGCCAAGACCAAGAAGCAA
TATATGCCTTATGTTATAGATAGCCTATTATAGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_p17.g1 MSMg01no201_p17.g1 CHROMAT_FILE:
MSMg01no201_p17.g1 PHD_FILE: MSMg01no201_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:37 2005
         (337 letters)



>mm_chr10_99524945_99525681
          Length = 737

 Score =  636 bits (329), Expect = 0.0
 Identities = 335/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattctactattgggaagagcatgagatggataatggtagagattcacgagggaggagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattctactattgggaagagcatgagatggataatggtagagattcacgagggaggagaa 260

                                                                       
Query: 61  ttccatgtgctctctggccactaagtggattacaggtgtgtcaccatgccaggctagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccatgtgctctctggccactaagtggattacaggtgtgtcaccatgccaggctagtat 320

                                                                       
Query: 121 gtagcattttacacatagctgcttggacacagtttgttgcaatgagctagagaacaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagcattttacacatagctgcttggacacagtttgttgcaatgagctagagaacaaaaa 380

                                                                       
Query: 181 ataacaaagaacaaaaaacaaaagatgaacatgcgctgctgagccatgccacagttcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataacaaagaacaaaaaacaaaagatgaacatgcgctgctgagccatgccacagttcatc 440

                                                                       
Query: 241 aggaaacctgaattctagtccacataaaacacccaagaggcaggtgacttcagtgatttg 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 aggaaacctgaattctagtccacataaaacacccaagaggcaagtgacttcagtgatttg 500

                                                
Query: 301 gtcttcttacgtctcaatttcttcacttattaaacac 337
           ||||||||| |||||||||||||||||||||||||||
Sbjct: 501 gtcttcttaagtctcaatttcttcacttattaaacac 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)