BAC Information

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BAC

Clone NameMSMg01-202H15
Chromosome10 (Build37)
Map Location 71,242,132 - 71,242,774
singlet/doubletsinglet
Overlap genenone
Upstream geneBicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812
Downstream geneEG327767, 1700049L16Rik, LOC100040505, Zwint
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202H15.T7 (MSMg01no202_h15.b1)MSMg01-202H15.TJ (MSMg01no202_h15.g1)
ACCAG387618AG387619
length729713
length of high quality
(start - end)
303 (427 - 729)643 (60 - 702)
definitionCHROMAT_FILE: MSMg01no202_h15.b1 PHD_FILE: MSMg01no202_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:18 2005CHROMAT_FILE: MSMg01no202_h15.g1 PHD_FILE: MSMg01no202_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTACCATTTTTAGTGTTGTTATGTATACCATCACATCACATC
TACAAATACTGATTTTTCACCTTCTTCCTTTCCAATTTGTATCCCCTTGA
TCTCCTTTAGTTGTATTATTGCTCTAGCTAGAATGTCAAGTGCTATATTG
AACAGATGGGGAGAGAATAGGCAGCCTTGTCTTTTCCCTGAAAGTGGGGA
ATGTCCTTGAACTCATTGTTATAGGAGACAACTTCCTGAGCAGAACACCA
GTGGCCCAGGCTCTAATATCAACAATTGATAAGTGGGACCTCATGAAACT
GATTTATTTTTGTACCGCCCCCCACACTGTTGTCAACAGGACAAAATGGC
AACCTCCAGACTGGTAAAGAAAATTCAACAACCCTACATTTGACAGAGGG
CTAATATCTAAAATTCACAAAGAACTCAAGAAGTTAGACACCAACAAATC
AAACAACCTAATTTAAAAAATGAGGTATAGAGCTAAACAGAGAATTCTCA
ACAGAGGGATCTTGAATGGCTGAGAAGAACTTAAAGTTCAAAGTCCTGAC
TCATCAGGGAAATGAAAATTAAAATAACCCTGAGATTCCATCCTACACAT
GTCAGAGAGCAATTGATAGCACATGCTGTCGAGGATGCAGAGCAATGAAA
CAGTCCTCCATTGTGGTGGGAGTGCAAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATCAGTGTAAGTAGGAAACATTTGGGTCTCTTCAAGCTGGT
GACTCCCTCCTCTGAATCTCAGAACTCTGAGATCAGAAAAAAAGGGGGCA
GTCTCAAGCCAAAAACTATTCAATAGATAAAGCTATGCATCTTAAGCCAT
TAGGATGGGGCATCAGGCAAGTCCTGGTATGGAAGAAGAGGAGGATAGGA
ATTTTTCACTTTCTCTTGATCAGGGGACTTTTAAAGAGCCACTATCTTAT
ATTCAATCAGCAAGCCAGCCCTTTCTGCCTTTGTGCCTTTCCCCTATAGA
ACTGCATACTAAAAACTACTTCCCTTTCCTTCATCTCTTACATTTGTTAT
CTTTTCTCTAACAGAATTCAAGATTAAGCAACAAGAAGACAAGCCCAACA
ATGCTCTATCCAAGGTTTATGAAGATTATTATGAACATCAGAGAGTCCAG
CCCTGCAGCGATGGACCATAAGCCAGTGTGTGCCTTCCATGTTAGGTCAT
CTTAATGCCTTAAAAGACTTGTCATTTTTTTTCTTTTATATCAAAACCAG
ATATTTTCTTTTTAAAAAATGTACAAGTTACAATGATGAGCGCAAGAAGG
CAATTTTTTATAGAAATGAATTGAGCCACCTGTACAACTTTCACTATTGG
ATCCATTGAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_h15.g1 MSMg01no202_h15.g1 CHROMAT_FILE:
MSMg01no202_h15.g1 PHD_FILE: MSMg01no202_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:18 2005
         (643 letters)



>mm_chr10_71241932_71242974
          Length = 1043

 Score = 1197 bits (619), Expect = 0.0
 Identities = 637/643 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagtgtaagtaggaaacatttgggtctcttcaagctggtgactccctcctctgaatct 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 843 atcagtgtaagtaggaaacatttgggtctcttcaagctggtgactgactcctctgaatct 784

                                                                       
Query: 61  cagaactctgagatcagaaaaaaagggggcagtctcaagccaaaaactattcaatagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 cagaactctgagatcagaaaaaaagggggcagtctcaagccaaaaactattcaatagata 724

                                                                       
Query: 121 aagctatgcatcttaagccattaggatggggcatcaggcaagtcctggtatggaagaaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 723 aagctatgcatcttaagccattaggatggggcatcaggcaagtcctggtatggaagaaaa 664

                                                                       
Query: 181 ggaggataggaatttttcactttctcttgatcaggggacttttaaagagccactatctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggaggataggaatttttcactttctcttgatcaggggacttttaaagagccactatctta 604

                                                                       
Query: 241 tattcaatcagcaagccagccctttctgcctttgtgcctttcccctatagaactgcatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 603 tattcaatcagcaagccagccctttctgcctttgtgcctttcccctagagaactgcatac 544

                                                                       
Query: 301 taaaaactacttccctttccttcatctcttacatttgttatcttttctctaacagaattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 taaaaactacttccctttccttcatctcttacatttgttatcttttctctaacagaattc 484

                                                                       
Query: 361 aagattaagcaacaagaagacaagcccaacaatgctctatccaaggtttatgaagattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aagattaagcaacaagaagacaagcccaacaatgctctatccaaggtttatgaagattat 424

                                                                       
Query: 421 tatgaacatcagagagtccagccctgcagcgatggaccataagccagtgtgtgccttcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tatgaacatcagagagtccagccctgcagcgatggaccataagccagtgtgtgccttcca 364

                                                                       
Query: 481 tgttaggtcatcttaatgccttaaaagacttgtcattttttttcttttatatcaaaacca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgttaggtcatcttaatgccttaaaagacttgtcattttttttcttttatatcaaaacca 304

                                                                       
Query: 541 gatattttctttttaaaaaatgtacaagttacaatgatgagcgcaagaaggcaatttttt 600
           |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 303 gatattttcttttttaaaaatgtacaagttacaatgatgagcacaagaaggcaatttttt 244

                                                      
Query: 601 atagaaatgaattgagccacctgtacaactttcactattggat 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atagaaatgaattgagccacctgtacaactttcactattggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)