BAC Information

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BAC

Clone NameMSMg01-203D08
Chromosome10 (Build37)
Map Location 31,018,563 - 31,019,073
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448
Downstream geneHddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203D08.T7 (MSMg01no203_d08.b1)MSMg01-203D08.TJ (MSMg01no203_d08.g1)
ACCAG388067AG388068
length781755
length of high quality
(start - end)
---512 (77 - 588)
definitionCHROMAT_FILE: MSMg01no203_d08.b1 PHD_FILE: MSMg01no203_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:17 2005CHROMAT_FILE: MSMg01no203_d08.g1 PHD_FILE: MSMg01no203_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGGGGGGGCCAAAAACAACCCCCCNNCCCCCACAANNNNNAAATCAAAT
TGGGGCGCCCAAAGAGGACNANAATCCCAACCNGNNGANNNNGNNNNNNT
TCCAAAAAAGAGGGNNNNNNNANNGNNAGAGAANGAAGAAGNNNNANNNT
TTTTTCCCAAAAAGAAGGGAGANAAGNNGGNAAGAAGAAAGNNNGGNNNN
NNNNAGNAAGAANAGGNNGGNNNGGNNANNAAGAAAAGNNAGGGNNGGAN
NNAGGGNAAGGAGANGANGGANGGANNNNNANAGGNANNTGTTTTTTAAN
TTTTANTATTTNNATATGTATTNTTNAAATTGGTNTATTAGNTTTAAGAA
AAATTTGGGTGCTTTGANAGAANNAANANGAANNNANAANAAAAAATTGT
TTTCTCCCCCCGGCCCGATGGAANAATAATGATGTTAGTCTCAGGGGGGG
CCCGAGAAATGAAAAGAAAAAAATCCTAAGTGCTTCGTGAGATCAGTTAA
CACTAAAATGTTCTCCTCAGCTTAAATCAAAGAATCCTTGACATCCATGA
TTAAACAGTATCTGCAGGCTACAGGAAAGGATGGTAAAGAGATCAATACG
AGGTGAAAATAAAATTATAAGAGAAAAAATGAAAGATAAGTTAACAACAA
AGAAAGTAAAAAAGGGAATCAAATAAAAAGAAAAACCGAAACAAAATTTT
TTTTTTTGTTAAAGGAGACAGGCTCATCGGAAGGGGAAAAGGCGATGAAA
GGGATAATGGGAGGTTGGGGGAGGAAAGGGG
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTTGTTCTAAATATGTTTAGA
ATTCTGCTGGGCCTCTCTTACTTAGAACAAGGAATCTGTGCTTCACAGTT
AAGCAGTGACTCCGTGTAGCTCTCTCACTCACATCCCAGCAAATGACTTC
AACCCTGGGGGCCTTTGGTAGAATGACATTTCTCCCCATGTAACAAGGGT
TCTCTTCATTTTATAACTTTGAGATTACCAGAATAAAAATGTGGCTATTT
GAAAACGTATTGTGATGTCTTAGTCTGTATCCAAATAAAATTTTGACCTT
TATTATATGCAGTATCCTATACTTACTGATTTCTATATGAACATAAATCA
CCACAAAGGCCTCTTCAACCCCGCCACTACTTGAAAAGACCATTTGTAAG
GACGTTAGAATATACTCCTGGTACTCTAGGCATTCGTATACTTTTTTCTA
AATATAATCACATGGGAGTGCTGTTACCATTACAGGTGATAGGTAAGAAG
AATGATGGGAGAGTGACAAAGGAAGAAGGACAGAAGCAGAAATAGTGAGA
GTATAAATATTTACTCAATCCAGTTAGGAAACAGGACATTTAATATAGTC
ATGCTCCAGAGATGAAAAAGCAATGGTGATGACATAGTGCCACCTCGTGG
TTGACTCTCAAAACTACATGTAGTTTCTTGGAGCTGCCCTGAAAATGCTA
GATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_d08.g1 MSMg01no203_d08.g1 CHROMAT_FILE:
MSMg01no203_d08.g1 PHD_FILE: MSMg01no203_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:18 2005
         (512 letters)



>mm_chr10_31018363_31019273
          Length = 911

 Score =  897 bits (464), Expect = 0.0
 Identities = 500/512 (97%), Gaps = 1/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgttgttctaaatatgtttagaattctgctgggcctctcttacttagaacaaggaatc 60
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cttgttgttttaaatatgtttagaattctgctgggcctctcttacttagagcaaggaatc 260

                                                                       
Query: 61  tgtgcttcacagttaagcagtgactccgtgtagctctctcactcacatcccagcaaatga 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tgtgcttcacagttaagcagtgactccgtgtagctctttcactcacatcccagcaaatga 320

                                                                       
Query: 121 cttcaaccctgggggcctttggtagaatgacatttctccccatgtaacaagggttctctt 180
           |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccaccctggaggcctctggtagaatgacatttctccccatgtaacaagggttctctt 380

                                                                       
Query: 181 cattttataactttgagattaccagaataaaaatgtggctatttgaaaacgtattgtgat 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattttataattttgagattaccagaataaaaatgtggctatttgaaaacgtattgtgat 440

                                                                       
Query: 241 gtcttagtctgtatccaaataaaattttgacctttattatatgcagtatcctatacttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcttagtctgtatccaaataaaattttgacctttattatatgcagtatcctatacttac 500

                                                                       
Query: 301 tgatttctatatgaacataaatcaccacaaaggcctcttcaaccccgccactacttgaaa 360
           |||||||||||||||||||||||||||||||||| |||||||||| |  |||||||||||
Sbjct: 501 tgatttctatatgaacataaatcaccacaaaggcttcttcaaccctgtaactacttgaaa 560

                                                                       
Query: 361 agaccatttgtaaggacgttagaatatactcctggtactctaggcattcgtatacttttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaccatttgtaaggacgttagaatatactcctggtactctaggcattcgtatacttttt 620

                                                                       
Query: 421 tctaaatataatcacatgggagtgctgttaccattacaggtgataggtaagaagaatgat 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 -ctaaatataatcacatgggagtgctgttaccattacaggtgataggtaagaagaatgat 679

                                           
Query: 481 gggagagtgacaaaggaagaaggacagaagca 512
           ||||||||||||||||||||||||||||||||
Sbjct: 680 gggagagtgacaaaggaagaaggacagaagca 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space:   452302
Effective search space used:   452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)