BAC Information

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BAC

Clone NameMSMg01-204C02
Chromosome10 (Build37)
Map Location 106,394,351 - 106,395,031
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667758, EG639162, Ppfia2, Olfr1556-ps1
Downstream gene8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq, EG628870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204C02.T7 (MSMg01no204_c02.b1)MSMg01-204C02.TJ (MSMg01no204_c02.g1)
ACCAG388632AG388633
length730731
length of high quality
(start - end)
685 (46 - 730)547 (77 - 623)
definitionCHROMAT_FILE: MSMg01no204_c02.b1 PHD_FILE: MSMg01no204_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:33 2005CHROMAT_FILE: MSMg01no204_c02.g1 PHD_FILE: MSMg01no204_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGAATGAAACACGATGTTTGTCCCTTTGGTAGTGCCTGCAGTGG
TCTAGAGTGTGGTGTTTCTTCAGATTTCAATACAAAGTTACTTTGTATTC
CTAAAAGACAGGTCCCAGAACATTTCCTGCTCTCTGGATGAAGGAAAGAC
TACGTGGATTCCGGCTATGATACTCTTGATACTACTGTTTGTTTTATATG
TCAAAATTGAGGATGCGATGTCTCTCTTAATCTCCCTCACAGTATTATTA
CCAGGCAAAAAAGATCATACTAAAACCAAGATTTGGGATTTATGAGAAAG
CAGATAACCCTGTGGCATACTTGTTCTTAGTCGGGAGATGTCCCCAAAAG
TAAACACTCTCCCCTCTTTCCCTAGATGGGAGCCCAATAAATAAGTAGCT
GGTGTGAAACTGTCACGATGTGAACAAACATCATTAAATGTCAGGAGTTC
GATATCTGTAGAACGAGAAATTGGCAGACAGTGAACGCAAAGCCGTTTGG
ACAACTCCACACAATTCGCTGCCATCCTACCGCTGCCCCGGGACAAGGTC
AGGAGAAAACATCAGGGAGCGGGCAAGCCGTACTTTCCATAGAAGCAATA
GACCTGGTCAGAAAAAAATGGATGCCCCTGAGAGGGGAAGAGTCGAAGAC
CAATGGCTTTAATAACAGTGAGCCCGGTGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAACTTTTCTTTATTTCCAGCCC
TCCTCTCCAGTTTTATTTTTCTTTATTGACTGTTTCTGCTTGAAAATCTT
AAACGGTTTTCTTCATTTCATTCTGGTGTTTTTCTGTGTGTTTCCTAGGT
TTCTTTAAGGGGTTTACTCATTTCCTCTTTAAGGGCCTCTGTAGTATTCA
AAAGGCTCTTATGAAGTCATTGTCCAGTGCTTCATCTACATTGTATTTCC
CAGGGCCTACCATGGTAAGAATTTTGAGCTTTAGTGGAACCATTTCGTCC
GAGCCATCATATTCTCATGCTGCCTTCTAGAATCTGGATTTATATTTGTT
GAAAACTAGCTGGTGCTATCTGGACTTGTTCTTGTTAGATTGGTAACCCA
CCCCTGGCTTGCTGCTGCTCTCTCTGGTTCCTAGGGTACTGTGTTGGCTG
TGTATTGACTGGTAGAGAATGTTTCTGAGGCCCTGGTAGGTGTGACCATG
GGCGGGGCCTCAGAGGGATGGTTAGACTGATTCTTGCTATTGGAAGCTTC
CACTCAGGGATGGAGATTGGTTAAAAGAGGNTGTCTGTAATAAAGGAAAT
AATTTATTTAGTATTTCATTTATTGCCTTTATTCCTCGTCATTTTAACAC
AATTCTTTACGACTTATCACTTACTTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_c02.b1 MSMg01no204_c02.b1 CHROMAT_FILE:
MSMg01no204_c02.b1 PHD_FILE: MSMg01no204_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:33 2005
         (685 letters)



>mm_chr10_106394147_106395231
          Length = 1085

 Score = 1301 bits (673), Expect = 0.0
 Identities = 679/681 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggaatgaaacacgatgtttgtccctttggtagtgcctgcagtggtctagagtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggaatgaaacacgatgtttgtccctttggtagtgcctgcagtggtctagagtg 264

                                                                       
Query: 65  tggtgtttcttcagatttcaatacaaagttactttgtattcctaaaagacaggtcccaga 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtgtttcttcagatttcaatacaaagttactttgtattcctaaaagacaggtcccaga 324

                                                                       
Query: 125 acatttcctgctctctggatgaaggaaagactacgtggattccggctatgatactcttga 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 acatttcctgctctctggatgaaggaaagactgcgtggattccggctatgatactcttga 384

                                                                       
Query: 185 tactactgtttgttttatatgtcaaaattgaggatgcgatgtctctcttaatctccctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactactgtttgttttatatgtcaaaattgaggatgcgatgtctctcttaatctccctca 444

                                                                       
Query: 245 cagtattattaccaggcaaaaaagatcatactaaaaccaagatttgggatttatgagaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagtattattaccaggcaaaaaagatcatactaaaaccaagatttgggatttatgagaaa 504

                                                                       
Query: 305 gcagataaccctgtggcatacttgttcttagtcgggagatgtccccaaaagtaaacactc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagataaccctgtggcatacttgttcttagtcgggagatgtccccaaaagtaaacactc 564

                                                                       
Query: 365 tcccctctttccctagatgggagcccaataaataagtagctggtgtgaaactgtcacgat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcccctctttccctagatgggagcccaataaataagtagctggtgtgaaactgtcacgat 624

                                                                       
Query: 425 gtgaacaaacatcattaaatgtcaggagttcgatatctgtagaacgagaaattggcagac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgaacaaacatcattaaatgtcaggagttcgatatctgtagaacgagaaattggcagac 684

                                                                       
Query: 485 agtgaacgcaaagccgtttggacaactccacacaattcgctgccatcctaccgctgcccc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtgaacgcaaagccgtttggacaactccacacaattcgctgccatcctaccgctgcccc 744

                                                                       
Query: 545 gggacaaggtcaggagaaaacatcagggagcgggcaagccgtactttccatagaagcaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gggacaaggtcaggagaaaacatcagggagcgggcaagccgtactttccatagaagcaat 804

                                                                       
Query: 605 agacctggtcagaaaaaaatggatgcccctgagaggggaagagtcgaagaccaatggctt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agacctggtcagaaaaaaatggatgcccctgagaggggaagagtcgaagaccaatggctt 864

                                
Query: 665 taataacagtgagcccggtgt 685
           |||||||||||||||||||||
Sbjct: 865 taataacagtgagcccggtgt 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)