BAC Information

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BAC

Clone NameMSMg01-204C09
Chromosome10 (Build37)
Map Location 71,794,456 - 71,794,680
singlet/doubletsinglet
Overlap genenone
Upstream geneZcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
Downstream geneZwint, LOC432471, LOC544705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204C09.T7 (MSMg01no204_c09.b1)MSMg01-204C09.TJ (MSMg01no204_c09.g1)
ACCAG388642AG388643
length781813
length of high quality
(start - end)
225 (135 - 359)---
definitionCHROMAT_FILE: MSMg01no204_c09.b1 PHD_FILE: MSMg01no204_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:35 2005CHROMAT_FILE: MSMg01no204_c09.g1 PHD_FILE: MSMg01no204_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCTTTCCTCCTCCTTTTTCTTATCTATTTTTCTAATTATAATCTTNTC
CTTTCTCTGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTCTAGGCCAGAGAGAGAGATGTGAAACATGCCAG
AACTTACTGACAAAATGTCCCGTATTAACTATTTTCAATGAAAATAATGA
GCCAGACAAGTTTCTCTCCCTCCTGAAGAGACTATATATGTTCCTGTTGG
GTTCCAGTCCATTTTTCTTTATTAAGAAGGTATTGACAAGATAAGCGTAT
TTCCTGCTGTCTCATAAAAGCATCCAGTCATACATTATCTGTGCTGAGAG
GGAAAACACTCAAAGAAACTCATTTGATTCCAGGAAGTAACAGCTTTGCA
ACCGGTGAAAGAATATTACTTCTTCACTGCCCCACTCCCCGTGGAACATT
GATCCAAAGGGTCCAAATCATACATCCCCGCTCATAAAATGCATTTGAAA
CTTCCCATCATAAGACTAAATCAATATCTTGGCAGGTGCTTAGGACATAT
TTTTTCCACCTAATGTTTTCTTCCCCCTACTGGTATTGAAAACAAATATT
TCCAGAAGCTGATTAAATTCTTACTTGTTGAAAAAAAAAGTCTTGCCCAG
AAAAATCAAAGGTTAAATCAGGCAGGATGTGTCATGACATGATCAATTCC
TTTTGAGCTATAAATATCTACTCTTTTGTATTAACTCCCATGGACGTTTG
CACACATTAGGTACTTGGATACTATTAGAAT
NTTAACTTTNNCCNNTCCACCNCNCTTCATCTATACTTTCTCTCCCTGCA
AAAAAGGTTATTTCAAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTG
AAAAAAAAAATGTTTTCTTCAGAGCATCAAAGTAATAATGTGCCCTCTCA
TTTCATGCACTGCCCTGTTAACGATGCAAACACATTCTTGTATTATTTCT
TTACTTGTAGGGATTCCATTTCATGTGAAAGAAATTACTTCTTGATATTT
CATCGATTTTTTTTTACGTTAATCAGTTCAATGAACCTTACCTGATTGCC
CAATACTAACTTTCTGCATTATACTAAGAATTCAGGAGACAAAGATGTTA
TTTTGCTCAGGCTCTTGACAAAGGGAAATTTTACCATGTATTATATTTGA
CCCCCCAACTGCCCCGCTAATGTAATTTATTATTTTAGCATCATCTCAGT
TAAAAAAAAAAAAAAAATTTTCTTTTGAGACGGAGTCTTATAAATTCTTG
CAGTACTGGAATTCAATTATCTAGTCAAAAATGACCTTGAACTTCTGTTC
CTCATGTTTACTAACTCATAAAATTATAAATATGTGCCACATTACCTAGT
CTTTCATGAACTCGTATACCTATTGATAAAATCTGAATGTACGATTAATA
ATTAACCCTTTAAATAAAAATTTAAAAATTATTTTTATGAATTACCTAAC
ATGGATAAAATTATAACTTCTTTTCTATTAGATGTTTTAGATTATATTGT
ATCAACAACATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_c09.b1 MSMg01no204_c09.b1 CHROMAT_FILE:
MSMg01no204_c09.b1 PHD_FILE: MSMg01no204_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:35 2005
         (225 letters)



>mm_chr10_71794256_71794880
          Length = 625

 Score =  427 bits (221), Expect = e-124
 Identities = 224/225 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgaaacatgccagaacttactgacaaaatgtcccgtattaactattttcaatgaaaa 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgaaacatgccagaacttactgagaaaatgtcccgtattaactattttcaatgaaaa 260

                                                                       
Query: 61  taatgagccagacaagtttctctccctcctgaagagactatatatgttcctgttgggttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgagccagacaagtttctctccctcctgaagagactatatatgttcctgttgggttc 320

                                                                       
Query: 121 cagtccatttttctttattaagaaggtattgacaagataagcgtatttcctgctgtctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtccatttttctttattaagaaggtattgacaagataagcgtatttcctgctgtctca 380

                                                        
Query: 181 taaaagcatccagtcatacattatctgtgctgagagggaaaacac 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaagcatccagtcatacattatctgtgctgagagggaaaacac 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)