BAC Information

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BAC

Clone NameMSMg01-204C11
Chromosome10 (Build37)
Map Location 123,020,503 - 123,020,796
singlet/doubletsinglet
Overlap geneAI851790
Upstream genePpm1h, D630033A02Rik, Mon2, Usp15, LOC100042958
Downstream gene4930503E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204C11.T7 (MSMg01no204_c11.b1)MSMg01-204C11.TJ (MSMg01no204_c11.g1)
ACCAG388645AG388646
length720722
length of high quality
(start - end)
675 (46 - 720)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no204_c11.b1 PHD_FILE: MSMg01no204_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:35 2005CHROMAT_FILE: MSMg01no204_c11.g1 PHD_FILE: MSMg01no204_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGTACCTCATTTTTTAATAGGGTTGTTTAATTT
TCTGGAGTCCAACCTCTTGCGTTCTTTATATATATATATGTATTCCCAGC
AACAATATATATATTGTTTACAATATATATATTGGAGAACACATATGATA
TGCACTCACTGATAAGTGGATATTAGCCCAGAAGCTCAGAATCCTTCTTA
GAAGGGGGAACAAAATACCCATGGAAGGAGTTACAGGTACAAAGTTCAGA
GCAGAGACTGAAGGAATGATCACCCAGAGACTGCCCCACTTGGGGATCCA
TTCCATAAACAATCACCAAACCCAGACACTATGGCAGATGCCAACAAGAG
CTTGCTGACAAGAGCCTGGTATAGCTGTCTCCTGAGAGGCTCTGCCAGTG
CCTGGCAATTACAGAAGTGGATGCTTACAATCATCCATTGTACAGAGCAC
AGGGTCACCAATGAAGGAGCTAGAGAAAGTACCCTAGGAGCTTAAGGGGT
TTGCAGGCCCATAGGAGGAACAACAATATGAACTAACCAGTACCTCCAAA
GCACCTTGGGACTAAACTACCAATCAAAGAAAACACATGGTGGGACTTGT
GGCTCTAGCTGTATATGTAGCAGAGGATGGCCTAGTCGGTCATCAGTGGG
AGGAGAAGCCCTAGGTGCTG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAGAGAACTGAAAACGTGATCC
TAGGAAGAGGAATGGAGAGACAGGTTCAGTGCAGAAGGTGATCTGTTGAG
AATAGTGTTACAATTACTGTGCAAAGCCTTATCTTCTGTACTGTGTGGGA
GCAATGTCACAAGGAACCACTGCCCATCCTTTGATGCCCCATGAACTTCA
TCAATTTTTCATCTTGGATGCTGAGGAAGATACTGAAAATATGTAATTGT
GGTTTGAAGAGAAGGCCAACTTGGAGAATGTTTCTTGGAAAGATTATAGT
AGGAGAGCCTTTTTAGGGCAAAACCTTCCTAGAGAAAAAGTAAACTTCCT
CATGTTCTGAAGCACTTCTGAAACCAGTTGAAAGCACTTAATATGAAGAG
ACAGGTGAAAAGTTTTTAGAAATAACTCAACTCATCAAATGATGCTTCAT
TCTTGGATGCTGATGGGCAAGACCAGGAAATACTTATGCAGTCCAACTTT
GGAGACACATTAGACTCCCTTCTCAGAAGGAATTGGAGCAGGAAGAAAAA
GTCCGTGTTGAAAAGGACCATTTCTGTGGTCACCAGTAAAATTTTACCTT
CCAAAAAAAAATAGCAAAAAAATCAATGTTTTTCATAAACAGAAATCAGA
AGAAGAGGAAAAAAAATCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_c11.g1 MSMg01no204_c11.g1 CHROMAT_FILE:
MSMg01no204_c11.g1 PHD_FILE: MSMg01no204_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:35 2005
         (294 letters)



>mm_chr10_123020303_123020996
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagagaactgaaaacgtgatcctaggaagaggaatggagagacaggttcagtgcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgagagaactgaaaacgtgatcctaggaagaggaatggagagacaggttcagtgcagaa 260

                                                                       
Query: 61  ggtgatctgttgagaatagtgttacaattactgtgcaaagccttatcttctgtactgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgatctgttgagaatagtgttacaattactgtgcaaagccttatcttctgtactgtgt 320

                                                                       
Query: 121 gggagcaatgtcacaaggaaccactgcccatcctttgatgccccatgaacttcatcaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagcaatgtcacaaggaaccactgcccatcctttgatgccccatgaacttcatcaatt 380

                                                                       
Query: 181 tttcatcttggatgctgaggaagatactgaaaatatgtaattgtggtttgaagagaaggc 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tttcatcttggatgctgaggaagatactgaaaatatataattgtggtttgaagagaaggc 440

                                                                 
Query: 241 caacttggagaatgtttcttggaaagattatagtaggagagcctttttagggca 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacttggagaatgtttcttggaaagattatagtaggagagcctttttagggca 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)