BAC Information

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BAC

Clone NameMSMg01-204G05
Chromosome10 (Build37)
Map Location 24,311,085 - 24,311,365
singlet/doubletsinglet
Overlap genenone
Upstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537
Downstream geneCtgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204G05.T7 (MSMg01no204_g05.b1)MSMg01-204G05.TJ (MSMg01no204_g05.g1)
ACCAG388785AG388786
length716717
length of high quality
(start - end)
668 (45 - 712)281 (76 - 356)
definitionCHROMAT_FILE: MSMg01no204_g05.b1 PHD_FILE: MSMg01no204_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:54 2005CHROMAT_FILE: MSMg01no204_g05.g1 PHD_FILE: MSMg01no204_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGCAAACTCGAATGACCAAGAAGCACCTAAAGAAATGTT
CAACATCCTTAGTCATCAGCGAAATGCAAAACCCTGAGATTCCACCTCAC
ACCAGTCTAAGATCAAAAACTCAGGTGACAGAAGATGCTGGCAAGGATGT
GGAGAAAGAGGTACGTTCCTTCATTGCTGGTGGGATTACAAACTGGTACA
ACCACTCTGGAAATCAGTCTGGCAGTTCTTCATAAAATTGAACATAGTAC
TACCTGAGGACCCAGCAATACTACTCCTGGGCATATACCCAGAAGATGCT
CCAACATGAAATAAGGACACCTGCTCCACTATGTTCATAGCAGCCATATT
TATAATAACAAGAAGCTGGAAACAATCCAGATGTCCCTCAACAGAGGAAT
GGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTTAGCTATT
AAAAAACAAAGACTTCATGGAATTCTTAGGCAAATGGATGGAACTTGAAA
ATATCATCCTGAGTGAGGTAACTCAGTCACAAAAGAACACACAGTAAGCA
CTCACTGATAAGTGGATATTAGCCCAAAAGTTTGTAATATCTAAGATTCA
ATTCACAGACCATATGAAGCGCAAGAAGGAAGACCAAAGTGTGGATGCTT
CAGTGCTTCTTAGAAG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAATTTTCTTAGGATATTTTCAG
ACGCAAAGGTATTGGTCAGAAGGCAATTACTCTGTGTGGTTTGTTTAACA
TTTGCCTGCTCATTTCCTTGCTTGAACCTGTAGTCTGGGGTAGAGGAGGA
GAGGGAGGACACTCTGTCTTAATGAGGTACTCCCTACACATTCTCTCAAG
TTAAACTGGGCTAGTCCTCTCCGCTGACTCTAGGCCTGTGCTAACAGCAG
GTGGCGATAGAGAGCACAAGTGTTGCTAAGGCCCCAGCCTTCTCTTACAG
GTGGCAAGTTTTAAGTATTGCCAACGACGGAGAATCTGGTCCTGTTTTCC
AATTGAATTAAGTGCAATATGAAATGTGATAGGTTATGTAAATCTAGAAG
AGAGATACTCATTTATTAAAATGTGTACTTTGGAGGGACTAATCAATAGG
TTTAGGAGGAACAAATTGGGATGGAGTGTTTATTCCAAGGAATGGAAGTA
AATGAAAGTAGTGGGAGACAGCTGATAACTATACATGAACACACCCCAGA
ATTTTGGTGAGGTGTGGGATAAATTTAGGCAGAGTCCCATCTGTTCACCC
TTGGAAACGTGCCTGTGGTCTGAACCCTGGACTTGCAATGCTAGGGGTCT
CTGGATTAGGTATGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_g05.g1 MSMg01no204_g05.g1 CHROMAT_FILE:
MSMg01no204_g05.g1 PHD_FILE: MSMg01no204_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:54 2005
         (281 letters)



>mm_chr10_24310885_24311565
          Length = 681

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaattttcttaggatattttcagacgcaaaggtattggtcagaaggcaattactctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tctaattttcttaggatattttcagacgcaaaggtattggtcagaaggcaattactctgt 422

                                                                       
Query: 61  gtggtttgtttaacatttgcctgctcatttccttgcttgaacctgtagtctggggtagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtggtttgtttaacatttgcctgctcatttccttgcttgaacctgtagtctggggtagag 362

                                                                       
Query: 121 gaggagagggaggacactctgtcttaatgaggtactccctacacattctctcaagttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaggagagggaggacactctgtcttaatgaggtactccctacacattctctcaagttaaa 302

                                                                       
Query: 181 ctgggctagtcctctccgctgactctaggcctgtgctaacagcaggtggcgatagagagc 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 301 ctgggctagtcctctccgctgactctaggcttgtgctaacagcaggtggcgatagagagc 242

                                                    
Query: 241 acaagtgttgctaaggccccagccttctcttacaggtggca 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acaagtgttgctaaggccccagccttctcttacaggtggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)