BAC Information

Click to search

BAC

Clone NameMSMg01-205O22
Chromosome10 (Build37)
Map Location 48,143,504 - 48,143,837
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042387, LOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689, Grik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205O22.T7 (MSMg01no205_o22.b1)MSMg01-205O22.TJ (MSMg01no205_o22.g1)
ACCAG389734AG389735
length759763
length of high quality
(start - end)
306 (71 - 376)625 (76 - 700)
definitionCHROMAT_FILE: MSMg01no205_o22.b1 PHD_FILE: MSMg01no205_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:56 2005CHROMAT_FILE: MSMg01no205_o22.g1 PHD_FILE: MSMg01no205_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGGGACTTTCCGATTTGCAATTCCCTGATGACTAAGGATTTTG
AACATTTCTATTTTTTTTCCAATTTTCATTAGGTATTTAGCTCATTTACA
TTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCC
TACCCACCCACTCCCCCTTTTTGGCCCTGGAAATCCCCTGTACTGGGGCA
TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA
GGCCGATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACT
GGTTAGTTCATAATGTTGTTCCACCTACCCGCCTGCAGATCCCTTTAGCT
CCTTGGCTACTTTCTCCCCCCCCTCCATTGAAAGCCCTGTGATCCATCCA
TTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCCTAGT
CTCACAAGTGACAGCTTTATCACCATCCTTGCAACAAAGGTTTGCTAGTG
TATGCAATGGTGTCATTGCTTGGAGGCTAATTATGGCATGGATCCCTGGA
TATGGCAGTCTCTAGATGGACCATCCTTTTGTCTCAGCTCCAAACTTTGT
CTCTGTAACTCCTTCCATGAGTGACTGTTTCCAATTCTAAGAATGAGCTA
AGTGTCCACACTTTGGACTCCGTCCTTCTCCAGTTCATATGCTTTACCAA
TGAACCTTA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTGGCAGTGTACAAGGCTGGTGA
GACAGAAAATGTGTCCTTCTTTGAAATGGGATGGTCTGTATGAAAATCCA
CGGGCAAACAGTGGTTCTACAAATCTGTTACAAGAAGACTTGTCAGAAAA
AAACTCAACTCTGAGGCGGCGCCATTTTCGGCTCCAGACAACCGGCCACC
TTCTGGGTCAGAGCACAGGTGTCCGCCCGGACCGAGAGGCTTCTGCCTCA
CGTTCCACGGAAGCCACCTTGGTTCCGGGACTGGCAGGCAGTCTGCAGGT
GAGAGTATGGGACACAGAGGCCAGCAGCTTCTGGGACAGGCGAGAGCCAC
AGAGCCTCTGAGGCGGTGCCCCCTTCAGCTCCAGACAACCAGCCACCTTC
CTGGTCAGAGCACAGGTGTCCACGAGGTCTGCCTCAGGTTCTGCAGAAGC
CACCTTGGTTCCCTAGGCTTCTGCCTCAGGTTCCGCGGGGGGCCACATTG
GTTCCGGGACTCCACAGAAAGTAGTCTACAAAGGAGAGAGTGTGGATTAC
TGAAACAATGGCTTCTGTGACAGGCCAAAGCAACACAGCTTCTGGGAAAG
ATCCTGTTTTAGGCCTTCATCTTCGACCAGGAGGAGGTCCAAACACCAGA
TAAATGTACACCACCCTGAAAGAGGAGACCTTGCCTGCAGAGGCTGCTCT
GACCACTGAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_o22.g1 MSMg01no205_o22.g1 CHROMAT_FILE:
MSMg01no205_o22.g1 PHD_FILE: MSMg01no205_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:56 2005
         (625 letters)



>mm_chr10_48143504_48144528
          Length = 1025

 Score =  623 bits (322), Expect = 0.0
 Identities = 331/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtggcagtgtacaaggctggtgagacagaaaatgtgtccttctttgaaatgggatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cagtggcagtgtacaaggctggtgagacagaaaatgtgtccttctttgaaatgggatggt 275

                                                                       
Query: 61  ctgtatgaaaatccacgggcaaacagtggttctacaaatctgttacaagaagacttgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctgtatgaaaatccacgggcaaacagtggttctacaaatctgttacaagaagacttgtca 215

                                                                       
Query: 121 gaaaaaaactcaactctgaggcggcgccattttcggctccagacaaccggccaccttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaaaaaaactcaactctgaggcggcgccattttcggctccagacaaccggccaccttctg 155

                                                                       
Query: 181 ggtcagagcacaggtgtccgcccggaccgagaggcttctgcctcacgttccacggaagcc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 154 ggtcagagcacaggtgtccgcccagaccgagaggcttctgcctcacgttccacggaagcc 95

                                                                       
Query: 241 accttggttccgggactggcaggcagtctgcaggtgagagtatgggacacagaggccagc 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 94  accttggttccgggactggcaggcagtctgcaggtgagagtgtgggacacagaggccagc 35

                                             
Query: 301 agcttctgggacaggcgagagccacagagcctct 334
           |||||||| |||||||||||||||||||||||||
Sbjct: 34  agcttctgagacaggcgagagccacagagcctct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)