BAC Information

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BAC

Clone NameMSMg01-206H04
Chromosome10 (Build37)
Map Location 15,841,864 - 15,842,157
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC637043, LOC100039492, LOC671439
Downstream geneLOC382457, LOC546472, LOC100039576, LOC627511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206H04.T7 (MSMg01no206_h04.b1)MSMg01-206H04.TJ (MSMg01no206_h04.g1)
ACCAG390060AG390061
length751764
length of high quality
(start - end)
294 (70 - 363)341 (74 - 414)
definitionCHROMAT_FILE: MSMg01no206_h04.b1 PHD_FILE: MSMg01no206_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:38 2005CHROMAT_FILE: MSMg01no206_h04.g1 PHD_FILE: MSMg01no206_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGCGGAAT
TCAACTTACTTCCCATAGAAAATTTTATTGGAAGAGCAAAAGTTTCAGTG
GGTCAGAGTGCTTTCTTTGCTCCTATGAACTCCTGATTTGAGTTCTGATA
CATAAAAATCCTGCCATGAACCCAGGTTCCACATAACCCTAGTGTTGCAC
ACTGGAGTAAAGGTGCTTTCCAGGACTCAATGGCCAGGAATTCTAACAAA
AAGTGAGTAACAAGGTTAGTTAGATAGTCTAGCAAAAGGAAATAAAGTGG
AGAGTGGTCAAATGGGATTTCTTTTGATCTCCTGGGAACTTTGCATGTTT
TCTCACACAAACACACACAATGGCAGAAGTATTGTAGTTTGAAAATATCT
CCTTCACAGAATCTCCCACCATCTTTTGGAAAGGACAGTATAAATAAGTA
ACGACTTTCCATCACAACAAAGAGCATCATCATGCAGTCTAGTTATCAGT
AGACTTTCAACAGAGCATATATTTCTGCACAGCTATCCAGTACTAGAGAT
TATAGTTTAACATGACTCGAAAACGATTTCTGGGGCAGATGCTCACAGCC
AAGCATTAGACTGAGCACAGGGTCCCAAATGGAGGAGTTAAAGATAGGAC
TAAAGGACCTAACGGGGGTTACAACCCCAGCGGAGCCACAACCAATATCT
ATCAATCATTTTCCTCAGAGCTCCCAGGTACTATACCCCGAACCCAGTAT
N
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGGTTTAAATCTGTACTCCATTTAT
ATTTTTATAAGTTTGTTGATTTCCACTTTCTTGAGTTTGTTATGTATTTT
GAATATTAGCCCTCTATCAGATATAGAGTTTGTGAAGATATTTCCTCATT
CTATGGTCTGCCTTTTTGTCCTATTGACAGCATCCTTTCCTTTAAAGCAG
CATTTCACTTTCATGAGGTCCCATTTATTAGTTGTTAATCTTAGTGCCTG
TGCTATTGGTGTTCTGTTCACAAACATATGTCTTTTGCCAATGCATTCAA
GACTAATCCTCATTATCTACTTTCTCCTTCCCCATTATCTCTTCTTATGA
CTATGGCTTAGTTGCACCCCGTGAAATGTTGTACAGCGTGAAATCAGGAA
TAATGATTTCTCAGGAAGTTCACTTTTTGTTGTAATGGTTATTTTTGTTT
TGCTTTGCTTTGTTTTTGTGTTTTTATTTGCTTGCTTGCTTTGGTATAGT
ATTGTTTTTATCTATTCCTGAATTTTTTGTCTTCCTATGTGCCGTATATT
ATTGTTCTTCAACGATCTGTAACTCATGTTATTATGTTTTTCTGGTGCTT
CGCCTTTGAATCCGTATATTGGCCTCTTGTTTCAATAATTCCAGTTACAT
TTTGTTTATCCCTGTTTTTTTTCCCCCCGTTGTTTTTTTCTTTTCCCCCT
ACCCTTGTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_h04.b1 MSMg01no206_h04.b1 CHROMAT_FILE:
MSMg01no206_h04.b1 PHD_FILE: MSMg01no206_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:38 2005
         (294 letters)



>mm_chr10_15841664_15842357
          Length = 694

 Score =  484 bits (250), Expect = e-141
 Identities = 283/294 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattttattggaagagcaaaagtttcagtgggtcagagtgctttctttgctcctatgaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||  ||   ||||||
Sbjct: 201 aaattttattggaagagcaaaagtttcagtgggtcagagtgctttctacgcaagtatgaa 260

                                                                       
Query: 61  ctcctgatttgagttctgatacataaaaatcctgccatgaacccaggttccacataaccc 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctgatttgagttctaatacataaaaatcctgccatgaacccaggttccacataaccc 320

                                                                       
Query: 121 tagtgttgcacactggagtaaaggtgctttccaggactcaatggccaggaattctaacaa 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtgttgcacactggagtaagggtgctttccaggactcaatggccaggaattctaacaa 380

                                                                       
Query: 181 aaagtgagtaacaaggttagttagatagtctagcaaaaggaaataaagtggagagtggtc 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtgagtaacaaggtcagttagatagtctagcaaaaggaaataaagtggagagtggtc 440

                                                                 
Query: 241 aaatgggatttcttttgatctcctgggaactttgcatgttttctcacacaaaca 294
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgggatttccagtgatctcctgggaactttgcatgttttctcacacaaaca 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)