BAC Information

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BAC

Clone NameMSMg01-206K01
Chromosome10 (Build37)
Map Location 108,550,381 - 108,550,619
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r12a, Pawr, EG667814, Syt1, EG368203
Downstream geneNav3, LOC100042497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206K01.T7 (MSMg01no206_k01.b1)MSMg01-206K01.TJ (MSMg01no206_k01.g1)
ACCAG390172AG390173
length725784
length of high quality
(start - end)
239 (129 - 367)---
definitionCHROMAT_FILE: MSMg01no206_k01.b1 PHD_FILE: MSMg01no206_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:51 2005CHROMAT_FILE: MSMg01no206_k01.g1 PHD_FILE: MSMg01no206_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATCAAGTACATGAATAGTATTAGATTATAGATCCAATAGCACAAGTCTT
CCTAGGTCTATACATAACTGTTTGGCTAATAGAGAAAATAGAGAAAAAAT
GAAATAATATAGTGTCTATGCCCCTAAGCGTTATCATAAACTTTCCAGTA
TATTTTCGTCTATTTCTGTTGCTGCATTGGGAAATTCATTCAAAATAAAA
ATAAAAAATGTTGCTTACCAAGGCTGAATCAAGTAATCTTCAGCCAGATC
TTCATTACTAAAGGTGTTCTAGCATTCCTTCCAGGCAGGTGAACACTTGT
GACTTAACTGGTTCCCATTGACCACACCTCGTACTACTTCCAACTGTTGA
TTAAGTGCCAACACACGAACGCTGATTGATAGAGACTCACACTTAAATAC
TAAGGACACTCTTTAGGACTGATTTGCAAAAAAAAAAAATTCCTCAAGGA
AGGTCCAGACAATAATAATTGGAAATCATAAGGAGTATACCTACTCAAAG
AAGCCTGGCAAACACTACACAGTCATTCTTGATGTCTACAAGTCATGAAA
GTAGAAAGAATATTTGTCCCATAGACGAGCAGATATTAGTTGCTATAATC
TATGCATATGCTATATCTTATGAACAAAGTGATTTAAGGCTTTAGGCAGC
CTTTAAATTGTTATAAGTTGGCCTC
TTTGTTTTGGGTTATTGGGGGGTGTTCCTTNCCAACAAAAAAAANTTACC
GAAGATAGGGGAGGCCTGGNGGCGGCCGGTTCCGACTCGAGNGACCNNNN
GAGGTTACAAAAAAAAGGGNNNNNGNNNNNNNNNGAGNANNNANNGANNG
ANTGTTTTCCCAAAAAAGAGGGGGGAANNGNGNNAGAAAANNGAAANNNG
AAGANAAAAGAGGAGGAAANAAAAAAAGAAGGGANAAAAGGGAAGAAGAA
AAAGAAAAGAGAGNGAAAGAGAAAAANGAAATTTTTTTAAGATTTGAATA
AATGATATATGTTGATTATGGTAAGAAAATAAAGAAANAAATTTTTAATG
ATTTAAAAAAAAAAAAAGAAAAAAAAGNAAATTTTTTTTTTTCACCACCC
CCACCGAGGTTTTAATAATATTTAGGGATTTGGTTCTNCATAAAAAAAAA
AAAAAAAAACGGGGGGGGGGGGGGGGGGNTTTTTCTCAATGATGAAAGAG
GTGTCAAGGATTTAAAAATAATATAAAAGGAAATGTTGAAAGAATAAATT
GTAATGATAAATTTTTCGTAAATATTACCTACAGGTATAAAAGAATATTA
TATTTCAATATATGAAAAGGAAAAGACATAAGGTTGATTTAATTCGATCA
TGGTTAATTTGTTTGGTTTAAAAATGAAGGGAATAAAGAAGGCGGATTTA
AAGACATTTTATTTTATATTTTTCCAATATACAAAAAGGGGGGATAAAAG
AATATTAACCCATAGTGGAACCATTTTTATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_k01.b1 MSMg01no206_k01.b1 CHROMAT_FILE:
MSMg01no206_k01.b1 PHD_FILE: MSMg01no206_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:51 2005
         (239 letters)



>mm_chr10_108550181_108550819
          Length = 639

 Score =  416 bits (215), Expect = e-121
 Identities = 233/239 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagagaaaatagagaaaaaatgaaataatatagtgtctatgcccctaagcgttatcata 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 atagagaaaatagagaaaaaatgaaataatatagtgcctatgcccctaagcgttatcata 260

                                                                       
Query: 61  aactttccagtatattttcgtctatttctgttgctgcattgggaaattcattcaaaataa 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactttccagtatattttagtctatttctgttgctgcattgggaaattcattcaaaataa 320

                                                                       
Query: 121 aaataaaaaatgttgcttaccaaggctgaatcaagtaatcttcagccagatcttcattac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaataaaaaatgttgcttaccaaggctgaatcaagtaatcttcagccagatcttcattac 380

                                                                      
Query: 181 taaaggtgttctagcattccttccaggcaggtgaacacttgtgacttaactggttccca 239
           || ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 381 tagaggcgttctagcattccttccaggcaggtgagcacttgtgacttaactggctccca 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)