BAC Information

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BAC

Clone NameMSMg01-207K05
Chromosome10 (Build37)
Map Location 57,683,297 - 57,683,481
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
Downstream geneEG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207K05.T7 (MSMg01no207_k05.b1)MSMg01-207K05.TJ (MSMg01no207_k05.g1)
ACCAG390803AG390804
length1,2221,283
length of high quality
(start - end)
186 (150 - 335)680 (79 - 758)
definitionCHROMAT_FILE: MSMg01no207_k05.b1 PHD_FILE: MSMg01no207_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:49 2005CHROMAT_FILE: MSMg01no207_k05.g1 PHD_FILE: MSMg01no207_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACATTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCCT
GGTATTCTGAGTCCACAATGAGNGGCTNNCNGAAGACNGCTCCCTTTCNC
NTNGGTCCTTATAAAACCTCTACAANCTGCCCCGGGNCCAGNGGAGAGNC
GGCCTTGCTTAANCNAANAACAAACAGGCCCCATGTCACCTCAAAGAAGA
ATGTGTGTAACGTATAACCTTGTAAAGAAAGATCCTCTTGGGAATATAGT
GAAGCCAAGGTTTTTTATATTGGTTCATTTGTTTTTTTTTTATTTGAGTT
TTTTATATATTGNGAATATTATCTGTTTTTTTTANNNNNNANAGNCNNAA
NACAAATNNAACAAACTTCTTATTACTACCTACTTGACACACACACTTTT
TTTTTTGCAAGCAAGGAAACACCACGCGCAGAGAGAAAAAAAAAACCCCC
CCCCCCAAAAACACCCCCCCCAGANAAAGAGAGAAGCACAGAAAAAAAAA
AAGAACGACACCAAAAACAAAGACCAAAAAAGAAAAAGACGAAAAAGCAA
AGGCCAAAACACACAAAAACCAGAAAAAAGACAAAAGAACCAAAAGCACA
CAACCAAAGCACAGGAGAGGCAGACAAGAAACACCCAACGCAAAGAAGGA
CCCAAGGACCCAACCAACCACGAAAGACAAAGCACAACAACGAACAAAAA
AAGCCACGAGAAAAGGAACCCAAACAAAAAGCCCCAACACACAAAAGGCA
ACCGACGACCCCCAGAAAAAACACAAAAGCACACAACACATAATTATTTT
TTTTAAAAAACCCACGCCAGAAATACATTTATCTCAACTATTTAATTAAC
AACATCCTACTGTAACTATTTACGTTTCTTGCTTTTTTTTCTAAAAAGTC
ACACCCCCTTCAACCCAATCCAAAATTAATTTTTATTAAACTACACTAAG
TCACCACAAAGCGAAAGATTTTCATAACAAAAAATAAAGATCCTTTATTC
TCTATTTAAATACCCCACTATCCCCTCCATCTACTGCATCTTTTATTTAA
CCTCTGTCCTTAATATTCTATTATTTATTATTACTCTTTACATTATATTT
TTCCACTATCTAACTATCTTCTCTATTCACCATTTCATAATACCTTTTCC
TTAACTATATAACTCTCCTTCTTTCACTCTACTATTTCCAGACAATAGAC
AACCAATTCTTACATATAGAAT
NCCCCTTTTTNTTTTTAACATGGAGGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCAAGCACGTTCTCCGGGT
AGAACAAAACAGCCTATTCACCCTACCCCTCATCCCACAACACAGCACAC
AAACACACAAACAAATTTTGTTAAAATCAATAAACTTTATTGAAACCAAT
GGAAACAAACTACACAAAACCAAACCAAACCCAACAAAGCCAACCCACCC
CTAAAAAAAAGAAAAAGAAAAAAAATGAAAAAGAAAGTGAAAAAGAAAAA
GAAAACAAACAAAAGACCTATGGGTAGTAGATATTAAAAGACTGGCCTGT
AAAACCTTGCACAGCTCTGCACGAAGCATCTGTAAGGATAACAGCAGTCC
ATATAAGCCAAGGAAGGAGTCCACTCTCCCCATTGCCCTCATGGAGTGTG
TGTCCTCTGTAGTGAAGCCTAGTCCTAGTGTCCCGTGTGATTTCCTGGGG
TCCACTGGAGCCAGTCACTTGGTGTGGCCCTTCTTTTGGGGTTATCTTTA
GGCTCCTTGTTGTTGAGGAGTCACTATTGGCCTCTCCATCTGTCCCTGTA
GCAGAGTCTCTCACTTTCAGGGCTGATTTCCTAATCCCCGGGCCCTGGAG
AAGGCACTTCATTATTATCCCCACCTGCAATCAATCCTTATAGTTAGCGA
GACAGCTTGCATTTCGGGAAGTCACTGGAGTTGGGTTTTTGATGCACATC
CTTGCTGGGATGGGTCCCTTCTCCAGTTCCAAATCGGGTCTCTTCAGGAA
CTTGGCCTCTCGGGTTTCTAAAAACAAGAGGTACTGTCTGTGAATCTAAA
CATATCTAGAAAAGCCTGATATTCCTTCTGGAGTGAGATGAAAACCTAGT
GTTTTGTCCCTTTGTTCCCATGTTTCTCTCCACTTTACAAAGGGGTGGCC
CCTGTCTCTTCAATTTAAATTCTCTTTATCACTTAATTCACAAAAAATTT
TCTATAATCTCTTTTCCCCTCCTTTATAACTCTCTTTATATTTTCATTAC
CAAAACTTTTTCCATTCTCTTCTTATTACACCCTCTTATACTATTCTTAT
ATTAAAATACAACATATATTCTTTTATTTTTCTTATCTCTCCTCTATACT
TACTTTCTGCATCATATTATATTTATATTCATTATTCCTCTCTTTACTAT
AATCTCTCATATTTATTTTATACTCTTCATTATTACTATCCTATTATCAT
ATTTCTAATATTACATATTCCATCTCATTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_k05.b1 MSMg01no207_k05.b1 CHROMAT_FILE:
MSMg01no207_k05.b1 PHD_FILE: MSMg01no207_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:49 2005
         (186 letters)



>mm_chr10_57683097_57683688
          Length = 592

 Score =  265 bits (137), Expect = 1e-75
 Identities = 170/189 (89%), Gaps = 14/189 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   cggccttgcttaancnaanaacaaacagg----ccccatgtcacctcaaagaagaatgtg 56
           ||||||||||| | | || ||||||||||        |||||||||||||||||||||||
Sbjct: 385 cggccttgcttgatctaataacaaacaggtgga----atgtcacctcaaagaagaatgtg 330

                                                                       
Query: 57  tgtaacgtataaccttgtaaagaaagatcctcttgggaatatagtgaagccaaggttttt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgtaacgtataaccttgtaaagaaagatcctcttgggaatatagtgaagccaaggttttt 270

                                                                       
Query: 117 tatattggttcatttg--ttttttttttattt----gagttttttatatattgngaatat 170
           ||||||||||||||||  ||||||||||||||    ||||||||||||||||| ||||||
Sbjct: 269 tatattggttcatttggtttttttttttatttttttgagttttttatatattgtgaatat 210

                    
Query: 171 tatctgttt 179
           |||||||||
Sbjct: 209 tatctgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 592
Length adjustment: 8
Effective length of query: 178
Effective length of database: 584
Effective search space:   103952
Effective search space used:   103952
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)