BAC Information

Click to search

BAC

Clone NameMSMg01-208A14
Chromosome10 (Build37)
Map Location 117,394,633 - 117,551,830
singlet/doubletdoublet
Overlap genenone
Upstream geneD630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
Downstream geneMdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2, LOC668223, LOC100042861
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208A14.T7 (MSMg01no208_a14.b1)MSMg01-208A14.TJ (MSMg01no208_a14.g1)
ACCAG391052AG391053
length712722
length of high quality
(start - end)		310 (46 - 355)279 (77 - 355)
definitionCHROMAT_FILE: MSMg01no208_a14.b1 PHD_FILE: MSMg01no208_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:43 2005CHROMAT_FILE: MSMg01no208_a14.g1 PHD_FILE: MSMg01no208_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,394,633 - 117,394,938)(117,551,552 - 117,551,830)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGAACTCACTGAGAGGTCCTTAAACTGTATTGACGCAGTAGAA
AGTGCAGAGAAACTAGTGCAATGTCACGCTTAGCTCTGTAGCTTTTGCGT
TGACGCCAAACGTGGTTTAAAAGTAAGCCCGTGTGATGGCTGGTCTTGGG
TTGTCACACCTGGGAAAAGGGAATCTCAACCGAAGATCTGCCCGGGGTGG
CATGGCTTGTCTGTGTGGTGTTCTCTTGATTGACATGGGAAGGTCCAACC
CACTGTGGGTGGTGCCATCCCTGGACTTGAGTTTCTGGGTTGTACAAGAA
AGCATGTTTTCTTTCCCCGCCCCGCCCCCGGGGAGTGGGATTCCTCCGTG
GTCTGTTCCTTTTCCCCCCCCACAAATACTGCTTGACTTATGACAGACTT
GTGACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
ACACACAAACAAACACACACACATACATCTATACCTTTCAATTTTGTTTG
CATGTAACGCACAGATTTACCCTAGCGACAAGATTATAGCCTTGTGCCAT
CACACCCAGCCCTTTATCTGAATTTAATGTCTCGCGAAAAGTTAATCCCT
TGTGCCGCGCAAGTATCCCAAAACCCTGCAGCTATGAGCCAGGTCCACAT
TTGCGTTTCTCG

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTTG
AACTCAGAAATCCGCCTGCCTCTGTCTCCCAGGTGCTGGGATTAAAGGCG
TGCGCTACCACACCCGGCCTGACCTCCTTTCTTAACCTTCCTTACCTGGA
AGGAGTAAACGTCATGTAGGCACATGCAAAAAGAACCAATGAGCTCACAG
CATAAACAGAGAACAGTCATCTCAATTTTTCCATGTAGAGTTCCTGATGA
CAGGTTAACTTGGAAGTTTGCAAGGTCTGTGTCTCTGAGAGAAGCAGCTG
GGAGAAATGTTTTTAAAGCTCACCCCCCCTGAGCGACTAATAGCCTGGTA
GCCACTCCCACCCCTCCCCCCTAAAGAAATTAAAATGAGATCATCACAGA
AGCCACCAAGTAGATAGATGGTTTACTGTAACTCAGTTAATTTTTTCTTC
GGCTGATTAGTTTTGGTGGTGTTCTTTCTTGTTTTGCCTTGTTTTGCCTT
TTGCTTTGTTCTCTACTCGTTCACTCTTATTACACCCCCCTATATCTTAT
CTCTTCCCCCACCTTTTTAACCCCTTCATGTGCGCCTCCAATACCACGAT
TTTCTCCACATTCTGTTTATGTATCACTTTTTCCTTTTTATCCCCGCCCA
ACTATCATATTTAGCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_a14.b1 MSMg01no208_a14.b1 CHROMAT_FILE:
MSMg01no208_a14.b1 PHD_FILE: MSMg01no208_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:43 2005
         (310 letters)



>mm_chr10_117394430_117395139
          Length = 710

 Score =  545 bits (282), Expect = e-159
 Identities = 300/306 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtgaactcactgagaggtccttaaactgtattgacgcagtagaaagtgcaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtgaactcactgagaggtccttaaactgtattgacgcagtagaaagtgcaga 263

                                                                       
Query: 64  gaaactagtgcaatgtcacgcttagctctgtagcttttgcgttgacgccaaacgtggttt 123
           | |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 264 ggaactagtgcaatgtcacgcttagctctgtagcttttgcattggcgccaaacgtggttt 323

                                                                       
Query: 124 aaaagtaagcccgtgtgatggctggtcttgggttgtcacacctgggaaaagggaatctca 183
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaagtaagcccgtgtgatggctgatcttgggttgtcacacctgggaaaagggaatctca 383

                                                                       
Query: 184 accgaagatctgcccggggtggcatggcttgtctgtgtggtgttctcttgattgacatgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 accgaagatctgcccggggtggcatggcttgtctgtgtggtgttctcttgattgatatgg 443

                                                                       
Query: 244 gaaggtccaacccactgtgggtggtgccatccctggacttgagtttctgggttgtacaag 303
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 gaaggtccaacccactgtgggtggtgccatccctggacttgaggttctgggttgtacaag 503

                 
Query: 304 aaagca 309
           ||||||
Sbjct: 504 aaagca 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no208_a14.g1 MSMg01no208_a14.g1 CHROMAT_FILE:
MSMg01no208_a14.g1 PHD_FILE: MSMg01no208_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:43 2005
         (279 letters)



>mm_chr10_117551241_117551919
          Length = 679

 Score =  501 bits (259), Expect = e-146
 Identities = 274/279 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagaccaggctggccttgaactcagaaatccgcctgcctctgtctcccaggtgc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 590 actttgtagaccaggctggccttgaactcagaaatccgcctgcctctgcctcacaggtgc 531

                                                                       
Query: 61  tgggattaaaggcgtgcgctaccacacccggcctgacctcctttcttaaccttccttacc 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgggattaaaggcgtgtgctaccacacccggcctgacctcctttcttaaccttccttacc 471

                                                                       
Query: 121 tggaaggagtaaacgtcatgtaggcacatgcaaaaagaaccaatgagctcacagcataaa 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tggaaggagtaaatgtcatgtaggcacatgcaaaaagaaccaatgagctcacagcataaa 411

                                                                       
Query: 181 cagagaacagtcatctcaatttttccatgtagagttcctgatgacaggttaacttggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 410 cagagaacagtcatctcaatttttccatgtagagttcctgatgacaggttagcttggaag 351

                                                  
Query: 241 tttgcaaggtctgtgtctctgagagaagcagctgggaga 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tttgcaaggtctgtgtctctgagagaagcagctgggaga 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |