BAC Information

Click to search

BAC

Clone NameMSMg01-209G21
Chromosome10 (Build37)
Map Location 21,842,505 - 21,842,812
singlet/doubletsinglet
Overlap geneE030030I06Rik
Upstream geneMyb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992
Downstream geneLOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21, Eya4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209G21.T7 (MSMg01no209_g21.b1)MSMg01-209G21.TJ (MSMg01no209_g21.g1)
ACCAG391958AG391959
length729725
length of high quality
(start - end)
312 (45 - 356)288 (57 - 344)
definitionCHROMAT_FILE: MSMg01no209_g21.b1 PHD_FILE: MSMg01no209_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:33 2005CHROMAT_FILE: MSMg01no209_g21.g1 PHD_FILE: MSMg01no209_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGTTGCTTGAGAAGCATTGACTTCTTAAATTTCCACCAACATTT
CTATTCCCATCTTACTCAAGCCTGCTCTGTTGGCCTTGACCTTCTCCCAG
CAGGAACTGTCAGCATCCAGGGCTTAAGCTCTCTGCCAAGCAACCAATTC
TCCCTGCCTCTTATCTTAAAGGGAGGGTATATGTTTTCCGTTCAGGAGTC
ACCAATTAATTTTTGAAAATGAGTTCTTGCTCGATGTTTGGGATACAATC
TGTTGTATTAATACTTATAAATGAATCCCAGCTCAGGACTGCTACCTACC
TCAATGTTNAATGNNTCCCAANGACAGAGACCAGAGACACACACAGCCTT
TATATTTTAATATGCCCCACCCCAAAACAATNAAAGGGCNTCTGCCTAGC
CTCCCTGCTACTAGAATTTACCTCTGCCAATTATTCCAAGTAATAACTTA
CTAACTCCTCTCTGTTCCATCTTGGCTGTTCTTAACTCCAATTAGTCAGC
AGTCTGAGCCATGTTTTCTTGACGCTCACCTTGCTCTTCTACACCATGGG
AGACACCCTCTTCTCCTGAAAACATGGCAGATCTCTTTTCTCTCCTGCCC
TCCTATCCCAAGCTCAGGAATCCTAAACTTCCACCTCTGTCAGTCTCTGC
AACTATTGTCTGTTGGTATCTTCATTTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTGTTTAATCCCTTCTGGAAGGAGAGAATTGACTTCCAAAAGT
TGTCCTCTTACCTACACACACACTTACACATACACACATACACACACTCA
CATATACACATGCGCTTGCATGCACATACACTTGCACACACACACACTTA
CACATACACAGATACTCATACATACACATGCATTTATACACAAATGCACA
CACACATACATACATATGCCCTCACATGCACATACACACCCATACACATA
TACTCTCACAACACACTCATACACACACTAAATAAATGTAATTAATATTT
CCACTGAACAACCCTGAATATGCTAGCATTAAAGACTGGCTTTGGACCCA
CCCCCAAACACAATACCTTCATTTATTTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTATTTATTTATTTATTTATTTATTTCTTGCCTTCTCC
TACTTTCCAACACTACCCCATTTAATTTCCTCTCCCTTCTCTCCTCTCCT
TTTACCCTCCATTTTAATTTTTTTCTCATCCCCCAAATACTCATATATAT
ACATACATGTTTAAAAATCCCTCATACCTCATCTAATTCTATTTTTTATT
TAATAACCCATTATCCCATATTCATCCCCCATCCCATTTTTTTCACTCTT
TTCCATTTCTTTTTTTTCCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_g21.b1 MSMg01no209_g21.b1 CHROMAT_FILE:
MSMg01no209_g21.b1 PHD_FILE: MSMg01no209_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:33 2005
         (312 letters)



>mm_chr10_21842301_21843012
          Length = 712

 Score =  528 bits (273), Expect = e-154
 Identities = 300/309 (97%), Gaps = 2/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagttgcttgagaagcattgacttcttaaatttccaccaacatttctattccc 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 512 gaattctcagttgcttgagaagcattgacttcttaaatttccaccaacctttccattccc 453

                                                                       
Query: 65  atcttactcaagcctgctctgttggccttgaccttctcccagcaggaac-tgtcagcatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 452 atcttactcaagcctgctctgttggccttgaccttctcccagcaggaacgt-tcagcatc 394

                                                                       
Query: 124 cagggcttaagctctctgccaagcaaccaattctccctgcctcttatcttaaagggaggg 183
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 393 cagggcttaagctctctgccaaggaaccaattctccctgcctcttatcttaaagggaggg 334

                                                                       
Query: 184 tatatgttttccgttcaggagtcaccaattaatttttgaaaatgagttcttgctcgatgt 243
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||
Sbjct: 333 tatatgttttccgttcaggagtcgccaattaatttttgaaaattagttcttgctccatgt 274

                                                                       
Query: 244 ttgggatacaatctgttgtattaatacttataaatgaatcccagctcaggactgctacct 303
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 273 ttgggatacaatctgttgtattaatacttataaatgaatcccagctcagggctgctacct 214

                    
Query: 304 acctcaatg 312
           |||||||||
Sbjct: 213 acctcaatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)