BAC Information

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BAC

Clone NameMSMg01-209H03
Chromosome10 (Build37)
Map Location 64,588,671 - 64,588,935
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna3
Downstream geneLOC665206, LOC216036, 1700023F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209H03.T7 (MSMg01no209_h03.b1)MSMg01-209H03.TJ (MSMg01no209_h03.g1)
ACCAG391966AG391967
length770730
length of high quality
(start - end)
76 (62 - 137)273 (77 - 349)
definitionCHROMAT_FILE: MSMg01no209_h03.b1 PHD_FILE: MSMg01no209_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:34 2005CHROMAT_FILE: MSMg01no209_h03.g1 PHD_FILE: MSMg01no209_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGTG
ATTTTCACATCTTGTATCCCCAGTCTCTGAGAGAGAGAGAGAGAGACAGA
GAGAGAGAGAGACCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAC
CATTCTGCGCAGGATAGCATCTAGGTCTCAGATGCACTCTTTAGCTTCTT
GCACAGTGTCCCTTCTGGCTTTCACCCCCTGCCCAGATCCCCACCTGACC
CCCCTTACCTCCGTTTTCCTTACCCTCCTTAGTACAGTCAGCCGCCAGTG
ACGAATCCGACCCCACTATTCTTGTGATAGCCCCATCTTGCATCCTGGGC
CTCTCATATATCTCCCTACCCCCCACAGCATCATGGCATTTAGAAGCTTT
CCACCTTCTTACACCGCCTTTCTTCTTCCCTTCTTCCCCCTTCTGTACGC
GTCTCCGAGCTTCTTATTTTCTTGCCCTTCCCTACCCCACCGCTGTTTGT
TCACTCAGCCCCGCCTTCTTTCCCCCATTTTTCCCCCCCCTCTTTTTCTC
CCCTTTTTTCCTGTTTTTTTTCTTCTGAATCCCCGGTTTATTTCTTTTCC
CTTCCTTCCCTCTACTTCTTTCTCTCCTTTTCTCTCATCATTCCCTCCCT
TCCCCCCACTTTTTCCGTTCTTCACTCTCTCGCTCCTTCCCCCGCTTCTT
TCCCTCTCCTCCCCCCTTTTTTCCTCTTCTCTCCCGCCCCCTTTTCCTTC
CTCCTTTTTGTCCTCCCTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTTGATCAAATATGCATTGTCC
ATGATCACAGGGCAAATCAATCAGCTTTAAGAATGTATTATGCTTGAAAT
CATTGATCTTCATTGATATTTTTATTTATGACAGGAAGAAAGGAATATGG
TAGGGATTGCTATTTTAACAGGGGAATAAACCTTTATAGAGGGTAAGTGG
TCCCACTCATATAGTTTCAGTGGTTATATCTCAAAAGCAGAGATAAGATG
ACACAATTGATCTTCCAGATGAATATTATGTCACAGCTGAAAATAAGCTA
ACTAAGGGAAATTTTTTTTGTTCACCCTTCGACCCACCTTAGAAGATTGA
GGAATCTAGACTCATAAAGATAACAGATCTGAATACAACTTTCTGTTTTC
CTAGTTTTGGACAAATCTTCTAAGAGTTATCTTACACTAACACACTGCTG
GACATTGTATTCCCCCTCTGAGCTTCTGGAGCTTGTTTGGAACTTGTGAA
GGATATTTGCAAGGTATGTGCCATAGGGTAATACTGTGAGCTGTGTAATT
ACCACCTATAGTCTTGGCTTGATGATTTTGTCCCACGCTTAAATAATAAT
ATTTACTGTCCCTTGGCTGTTTTTCCTTACTCCGGCTGTCCGTCCCTGGT
TGAATGAAAATTTTGTTTGTTGTGCAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_h03.g1 MSMg01no209_h03.g1 CHROMAT_FILE:
MSMg01no209_h03.g1 PHD_FILE: MSMg01no209_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:35 2005
         (273 letters)



>mm_chr10_64588471_64589143
          Length = 673

 Score =  431 bits (223), Expect = e-125
 Identities = 257/273 (94%), Gaps = 8/273 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgatcaaatatgcattgtccatgatcacagggcaaatcaatcagctttaagaatgt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgatcaaatatgcattgtctatgatcacagggcaaatcaatcagctttaagaatgt 260

                                                                       
Query: 61  attatgcttgaaatcattgatcttcattgatatttttatttatgacaggaagaaaggaat 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 attatgcttgaaatcgttgatcttcattgatatttttatttatgacaggcagaaaggaat 320

                                                                       
Query: 121 atggtagggattgctattttaacaggggaataaacctttatagagggtaagtggtcccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 atggtagggattgctattttaacaggggaataaacctttatagaggggaagtggtcccac 380

                                                                       
Query: 181 tcatatagtttcagtggttatatctcaaaagcagagataagatgacacaattgatcttcc 240
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatatagtttcagtggctagatctcaaaagcagagataagatgacacaattgatcttcc 440

                                            
Query: 241 agatgaatattatgtcacagctgaaaataagct 273
           ||        || |||| |||||||||||||||
Sbjct: 441 ag--------taggtcatagctgaaaataagct 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)