Query= MSMg01no209_k07.b1 MSMg01no209_k07.b1 CHROMAT_FILE:
MSMg01no209_k07.b1 PHD_FILE: MSMg01no209_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:50 2005
(284 letters)
>mm_chr10_127554954_127555635
Length = 682
Score = 513 bits (265), Expect = e-150
Identities = 278/283 (98%), Gaps = 2/283 (0%)
Strand = Plus / Minus
Query: 1 atacagcgctcacacagcactgccagcccaggagccacacagactgacgacaactcaacg 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 481 atacagcgctcacacagcactgccagcccaggagc--cacagactgacgacaactcaacg 424
Query: 61 gctttagaaatggtccagctgatggaaaggaagctacaactgcagaatacctttataatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gctttagaaatggtccagctgatggaaaggaagctacaactgcagaatacctttataatc 364
Query: 121 tgtcgctttccctggctctgcagcaagggtagcaatgcatggactgatgcacaccgcctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 363 tgtcgctttccctggctctgcagcaagggtagcaatgcatggactgatgcacacggcctg 304
Query: 181 actttagtgcaaagagagctgagaaaagaacccggaatctacactgtcagggaaagaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 actttagtgcaaagagagctgagaaaagaacccggaatctacactgtcagggaaagaggg 244
Query: 241 tactgctgtcttataatactgacatcctagtgtgcacgaagaa 283
|||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 243 tactgcagtcttataatactgacatcctagtgtgcactaagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 682
Length adjustment: 9
Effective length of query: 275
Effective length of database: 673
Effective search space: 185075
Effective search space used: 185075
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no209_k07.g1 MSMg01no209_k07.g1 CHROMAT_FILE:
MSMg01no209_k07.g1 PHD_FILE: MSMg01no209_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:50 2005
(288 letters)
>mm_chr10_127432552_127433239
Length = 688
Score = 474 bits (245), Expect = e-138
Identities = 266/283 (93%), Gaps = 16/283 (5%)
Strand = Plus / Plus
Query: 1 aattcacagcaatcacatggtggctcacagacttctataatggaattgaatgtcttcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aattcacagcaatcacatggtggctcacagacttctataatggaattgaatgtcttcttc 276
Query: 61 catcatgaaggcttaacatgcaaatagaacactcatatacatacatgcatgcatgcatac 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 277 catcatgaaggcttaacatgcaaatagagcactcatatacatacatgcatgcatg----- 331
Query: 121 atacatacatacatacatacatacatacatacatacatacatccttttcaaaatcaaaaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 -----------catacatacatacatacatacatacatacatccttttcaaaatcaaaaa 380
Query: 181 taaattctaaggaatatgttcggccaggaagaaaatcactttagacagaagctttacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaattctaaggaatatgttcggccaggaagaaaatcactttagacagaagctttacaag 440
Query: 241 agaataataaaactggccatcaaagtgcacacctgctatctga 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaataataaaactggccatcaaagtgcacacctgctatctga 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
