CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAGGGATTCCATACTTGTGTTATAAATCAGTTATTAAACCCCAT
GGCTGAGGATGTCATAGACTCCTCAGTGTTGACAGGGATAGAAGGAACAT
AAGAGGGATTGATAGGTGAGAGTAACCAAAATGCTTTATATACATGCTTG
AAATTCTCAAACGACAGTATCATTAATAAAAACTACAAAACTTAAACCAA
GCAAAAATATCCCAGAAAATAAATGTAAATATAATATAATCACCAAAATA
TAGAAATAGTTTAGTGCAGGCATGAATACTGTCTTGAAAGTACAGTTTCA
TCCCCAATTACTCATTCACACCCACCCCCCCCAAATTCCATTTAAAAATC
TCAGATAAAAATATCTTGTTCCAAAAAGAGATATTGTAAAGACTCAAATG
ATTAAGACAATAAATTAACTATGGGAAAGCTCCAAGTGTAATGAAAGGAA
CCATCTGCACGATGGCTTTCCTGATGCCTAAGATTTATAATCAATACAGT
CATCTCAGAAAAACAGATCAACTTATAATCATTCTATAAAAGATTGAATA
GAAGATTCCAAGGAGAAGAAGAAGAGATAGCAACCACAGGANATTCTTCA
GACCTTATTCTTGATTAAAGAATCTTATAAGAGATAGAGAGATAATCCAA
ACCATGTTTCTCAACCCTCATTCACAAAGTGA

CGATGATAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGGAGAAATGGAAGAGCCTGCATTT
CAGCAACACACACTGGTTTCCTTCCCTCTCATCTCAGGGGTAGACTCTTC
CCTCCAAGTCACTTCATTCTGTAGTACGTTCAAGGAGCAACATCATGGAT
TTTTATCTTTATTATACCGTGAACAAACAGAACTTCATTCCTAGCCTTTT
GTAGAGAAAGATGAACAATCTGGGACAAAGATTTCCAACTGTGTGTGTGG
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTNTN
TTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCTNNNNNTTTNTTATGA
ATTTTTTGTGGTGTTTTTCCCCAAAAAAAAAAAAAAAAATAGTTGGGGGG
GGGGGTGTCTTTTTTTTCTATTCCTCTCCTGTTTTTCCTTCCGTCCTTCC
CCTCCCTATTTACTCATGTTCTTTTCATTCCTCTTTGTTTTTCCGACGTA
CCCCCCTTTTTTTTTTACTCTCGTCGTTATCTCCTTCACCTGTTTTTGTC
CAACCATATTAATTATTTTTTCAATACACGCCCCCATTTTTCCTTTTTTA
TCTTTTTCTCGCTTTTATTTATTGTCCCGCCCATTTAGGTTTCTATTTTC
TCACGCATATTCTATTACTAGTACCTTTTTTGCGTTTATTTGCGGCCTCT
TCCGCCTTTGTTTTCCATATTTCTCATGCTTTTTTTTCTTCCCCCCATC

Query= MSMg01no209_k17.b1 MSMg01no209_k17.b1 CHROMAT_FILE:
MSMg01no209_k17.b1 PHD_FILE: MSMg01no209_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:52 2005
         (316 letters)



>mm_chr10_97410726_97411441
          Length = 716

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaagggattccatacttgtgttataaatcagttattaaaccccatggctgagga 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagggattccatgcttgtgttataaatcagttattaaaccccatggctgagga 264

                                                                       
Query: 65  tgtcatagactcctcagtgttgacagggatagaaggaacataagagggattgataggtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtcatagactcctcagtgttgacagggatagaaggaacataagagggattgataggtga 324

                                                                       
Query: 125 gagtaaccaaaatgctttatatacatgcttgaaattctcaaacgacagtatcattaataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagtaaccaaaatgctttatatacatgcttgaaattctcaaacgacagtatcattaataa 384

                                                                       
Query: 185 aaactacaaaacttaaaccaagcaaaaatatcccagaaaataaatgtaaatataatataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaactacaaaacttaaaccaagcaaaaatatcccagaaaataaatgtaaatataatataa 444

                                                                       
Query: 245 tcaccaaaatatagaaatagtttagtgcaggcatgaatactgtcttgaaagtacagtttc 304
           ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 tcaccaaaatatagaaatactttagtgcgggcatgaatactgtcttgaaagtacagtttc 504

                       
Query: 305 atccccaattac 316
           ||||||||||||
Sbjct: 505 atccccaattac 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no209_k17.g1 MSMg01no209_k17.g1 CHROMAT_FILE:
MSMg01no209_k17.g1 PHD_FILE: MSMg01no209_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:52 2005
         (270 letters)



>mm_chr10_97559399_97560068
          Length = 670

 Score =  491 bits (254), Expect = e-143
 Identities = 266/270 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggagaaatggaagagcctgcatttcagcaacacacactggtttccttccctctcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 427 actggagaaatggaagagcctgcatttcagcaacacacactggtttccttccctcccatc 368

                                                                       
Query: 61  tcaggggtagactcttccctccaagtcacttcattctgtagtacgttcaaggagcaacat 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcaggggtagactcttctctccaagtcacttcattctgtagtacgttcaaggagcaacat 308

                                                                       
Query: 121 catggatttttatctttattataccgtgaacaaacagaacttcattcctagccttttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 catggatttttatctttattataccgtgaacaaacagaacttcattcctagccttttgta 248

                                                                       
Query: 181 gagaaagatgaacaatctgggacaaagatttccaactgtgtgtgtgggagagagagagag 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 247 gagaaagatgaacaatctgggacaaagatttccaattgtgtgtgtgggagagagagagag 188

                                         
Query: 241 agagagagagagagagagagagagagagag 270
           |||||||||| |||||||||||||||||||
Sbjct: 187 agagagagagggagagagagagagagagag 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 12
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)