Query= MSMg01no210_g20.b1 MSMg01no210_g20.b1 CHROMAT_FILE:
MSMg01no210_g20.b1 PHD_FILE: MSMg01no210_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:58 2005
(228 letters)
>mm_chr10_48482927_48483554
Length = 628
Score = 290 bits (150), Expect = 4e-83
Identities = 196/228 (85%), Gaps = 26/228 (11%)
Strand = Plus / Minus
Query: 1 tattactttttatgttttgaaccactgaactatacacacacacacacacacacacacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tattactttttatgttttgaaccactgaactatacacacacacacacacacacacacaca 438
Query: 61 cacacacacacacacacacacacacacacacacatattccagaggtggatagttgatagc 120
||||||||| |||||||||||||||||||||||||
Sbjct: 437 cacacacac--------------------------attccagaggtggatagttgatagc 404
Query: 121 tggattttggtatatttcttttaaatttccaaaagaaatattttgcattgttttctatcc 180
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 403 tggattttggtatatttcttttaaatttccaaaaaaaatattatgcattgttttctatcc 344
Query: 181 tctattcttttcttgtatttattatgtacatgtaccttttctcctcag 228
||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 343 tctattcttttcttgtacctaccatgtacatgtaccttttctcctcag 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space: 135561
Effective search space used: 135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no210_g20.g1 MSMg01no210_g20.g1 CHROMAT_FILE:
MSMg01no210_g20.g1 PHD_FILE: MSMg01no210_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:58 2005
(610 letters)
>mm_chr10_48346641_48347652
Length = 1012
Score = 1040 bits (538), Expect = 0.0
Identities = 590/608 (97%), Gaps = 2/608 (0%)
Strand = Plus / Plus
Query: 5 tgggagaaaatatcacatagcaccaaaattaatgataactaggatggccacattaacatc 64
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgggagaaagtatcacatagcaccaaaattaatgataactaggatggccacattaacatc 264
Query: 65 acataatatgtaacatttaaaaaggaataaagagcaaacgataaaggattataatagaga 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acacaatatgtaacatttaaaaaggaataaagagcaaacgataaaggattataatagaga 324
Query: 125 tgtattccccaagtttgataaccacacaaaatagccatttattatatcacagaaggtttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtattccccaagtttgataaccacacaaaatagccatttattatatcacagaaggtttt 384
Query: 185 cataatgacattagctacctataatatgtaaacatgcagataaaagttttagaaattaag 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 cataatgacattagctacctataatatgtaaacatgcatataaaagttttagaaattaag 444
Query: 245 ctgatgttcatggaaattgtactcatgagagcagttaatttttaaatcaaggttttgctt 304
||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 445 ctggtgttcatggaaattatactcatgagagcagataatttttaaatcaatgttttgctt 504
Query: 305 tttatatatatggaatgtattctgatcatatacatcccccatctccctctcatatcttct 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 tttatatatatggaatgtattctgatcatatacatcccccatctccctctcatagcttct 564
Query: 365 caaatccccactgacctcctatcatccaaactt--gtcttcctcacttaaatgccttttt 422
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 565 caaattgccactgacctcctatcatccaaacttatgtcttcctcacttaaatgccttttt 624
Query: 423 ctatgagtacaagcagacataactgttatagaactatgattgtgataattatgccatata 482
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 625 ctatgagtacaagcagacataactgttataaaactatgattgtgataattatgccatata 684
Query: 483 gaaaaaagatcatctcatagatttcctctcctctctatcttctcttccttaaaattattt 542
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 685 gaaaaaagatcatctcatagatttcctctcctctctatcttctcttccctaaaattattt 744
Query: 543 cctccctttcctatgatgttctctgtgaggagtgggtggtgccaccgccccaagatggct 602
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 745 tatccctttcctatgatgttctctgtgaggagtgggttgtgccaccgccccaagatggcg 804
Query: 603 cccgggaa 610
||||||||
Sbjct: 805 cccgggaa 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1012
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1002
Effective search space: 601200
Effective search space used: 601200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
