BAC Information

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BAC

Clone NameMSMg01-210I07
Chromosome10 (Build37)
Map Location 93,433,073 - 93,433,394
singlet/doubletsinglet
Overlap geneVezt
Upstream gene4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2
Downstream geneFgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210I07.T7 (MSMg01no210_i07.b1)MSMg01-210I07.TJ (MSMg01no210_i07.g1)
ACCAG392605AG392606
length762768
length of high quality
(start - end)
326 (45 - 370)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no210_i07.b1 PHD_FILE: MSMg01no210_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:05 2005CHROMAT_FILE: MSMg01no210_i07.g1 PHD_FILE: MSMg01no210_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGTGGCAACTGGAGTCGAGCCAGCCTCTGCTTAATGGAGAGTTGC
AGTGTGTCCCTGGGAGTCGGAGGGGCAGTGGCCCCCGCAGCAGCAGCCTG
AGGAGACTTAGCCTCACTCTCATGCTGGTGGCACATGGTTTCCTCGGCTC
CTGGAAGGAGGAGGCCTGTGTCTGCAGAGGTGTCTTTGCTTGGCCCCTCT
GTTGGGCTGTCACACACATACTCAGTCCTACTGTCTTCCTTGTCGCCGGC
ACAGGGCTTACTAGTCTCCTCTTCAGTAGCATTACTATTGACTTTTTCTG
TATCTGAATTCATGGGTGGTTCTGAGCCACCCACCCATTCCACTGGGTCT
ACAGGAGACAAGGATGTCAACACAGCTTCAAAGAACAGAAAGAGGAAAAG
AAGAGAAAAAAGGAAAAAAAATAACTAAGGGCCCAACAACTTTTAAATTC
CCACTTATTTTTAAAAGGAGCAACAAATAAATAAAAACACAATAAAACTT
TCTAGTAAAATAAATGTAACTTTATAAATATGGGGAGTTTTTTGAGACAA
ATACCTCTTGATAATGAATCGACACGGGAACTTGCTGAATATTCCGCATT
TCCAGGCTGTGACTTTTCTAAGCTTGTTTCTTGTCTCATGTTTCTACTTA
TTTCCTAGGAATTTTCTGGGAATATATTCTTGTACTGCACCCGCATCCTT
TATATTTATATG
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACAAGGCTAGCGTCT
AACACAGAGATCTGCCTGCCTCTGCCTCCCAACTGCTGAGAGTAAAAGCG
TGCGTGTGCCACCACTGCCTGGCGAAGGAGATTATATTTTACCTTTTTAC
TCAAACGTTTTGTTTTCAATGACCATAAAAGACTAAGGCATAAAAAAAAA
AAAGAAAGAAAAAAGAAAAAAGTTGAAAATTATACGATAGCAAATACCTC
GAATTCTCTGACAACTGCAGCAAATCCTGGATTTTTCTTGCACTGCTCAT
CCAGCAAAGCTACGTTCTTATTTTATTCTTCGACGCCCGCGGAATACATT
TTTAAGTATGGCCCCTTCTTTACCAACATATCAACAATTCTTTGTTGTTC
TGTCCTATGGATAGAGGAGACACAAAAACACAAATGCAGTCATTAATGTG
TCTGAGGCACAGCTAAGTCACAAGCTCCTCTTGTTTTTCCCTCTTCTTCA
AGACCTATCCAAGCCGGGCAGTGTGGCGTACACCTTTAATCCTAGCACTT
GGGAGGCAGAGGCAGGCGAATTTCTGAGTTCGAGGCCCGCCTGGTTCTAC
AGAGTGATGTTGTAGTATTGCCAAGGGTTACACAGAGAAACCCCTCTTGT
AAATGGCCATAATCCCTTCTCCGATGTTACTAACCCTAACCATACCCGGC
TTATCGAAACTGGCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_i07.b1 MSMg01no210_i07.b1 CHROMAT_FILE:
MSMg01no210_i07.b1 PHD_FILE: MSMg01no210_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:05 2005
         (326 letters)



>mm_chr10_93432869_93433594
          Length = 726

 Score =  623 bits (322), Expect = 0.0
 Identities = 322/322 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggtggcaactggagtcgagccagcctctgcttaatggagagttgcagtgtgtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggtggcaactggagtcgagccagcctctgcttaatggagagttgcagtgtgtc 264

                                                                       
Query: 65  cctgggagtcggaggggcagtggcccccgcagcagcagcctgaggagacttagcctcact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgggagtcggaggggcagtggcccccgcagcagcagcctgaggagacttagcctcact 324

                                                                       
Query: 125 ctcatgctggtggcacatggtttcctcggctcctggaaggaggaggcctgtgtctgcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcatgctggtggcacatggtttcctcggctcctggaaggaggaggcctgtgtctgcaga 384

                                                                       
Query: 185 ggtgtctttgcttggcccctctgttgggctgtcacacacatactcagtcctactgtcttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtgtctttgcttggcccctctgttgggctgtcacacacatactcagtcctactgtcttc 444

                                                                       
Query: 245 cttgtcgccggcacagggcttactagtctcctcttcagtagcattactattgactttttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttgtcgccggcacagggcttactagtctcctcttcagtagcattactattgactttttc 504

                                 
Query: 305 tgtatctgaattcatgggtggt 326
           ||||||||||||||||||||||
Sbjct: 505 tgtatctgaattcatgggtggt 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)